Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5678
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50740-2|CAA90608.1|  383|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U40948-4|AAA81730.2|  517|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U39645-9|AAM51511.1|  297|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U39645-8|AAA80361.1|  414|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AY849796-1|AAW34234.1|  517|Caenorhabditis elegans acetylcholine...    27   7.4  
U00031-1|AAZ82851.1|  330|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF078785-11|AAC27097.2|  294|Caenorhabditis elegans Hypothetical...    27   9.7  
AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    27   9.7  

>Z50740-2|CAA90608.1|  383|Caenorhabditis elegans Hypothetical
           protein F31B12.3 protein.
          Length = 383

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -1

Query: 426 TCFAANTKRSTCQCATAQSSVRICSSYKVVS----QKVVFSINYLVSQK 292
           TC      + TC C +  S +    ++  V     + V+FSINYL+ QK
Sbjct: 78  TCCRNQLSQFTCYCNSIVSRIGDSLNFACVDNGHYRNVMFSINYLIDQK 126


>U40948-4|AAA81730.2|  517|Caenorhabditis elegans Hypothetical
           protein F55D10.5 protein.
          Length = 517

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = -1

Query: 372 SSVRICSSYKVVSQKVVFSINYLVSQK------QRNVRRVFFVSAKRSVQLTCVAFKFQN 211
           S +  C   K++  + +  +N L++         RN+ RV +V A     L C+ F F +
Sbjct: 292 SWISFCLGPKMIPARTMLGVNSLLALTFQFGNIMRNLPRVSYVKALDVWMLVCLTFVFCS 351

Query: 210 VSNLQTIG 187
           +  L  IG
Sbjct: 352 LLELAIIG 359


>U39645-9|AAM51511.1|  297|Caenorhabditis elegans Hypothetical
           protein C14F11.1b protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 43  EYLQIDTEELRFRNSATCIIDETGL---VACVPDG 138
           ++  +D ++ R+ + +TC  DETG    +A +P+G
Sbjct: 154 KFAGVDVKQYRYYDKSTCGFDETGALADIAQIPEG 188


>U39645-8|AAA80361.1|  414|Caenorhabditis elegans Hypothetical
           protein C14F11.1a protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 43  EYLQIDTEELRFRNSATCIIDETGL---VACVPDG 138
           ++  +D ++ R+ + +TC  DETG    +A +P+G
Sbjct: 154 KFAGVDVKQYRYYDKSTCGFDETGALADIAQIPEG 188


>AY849796-1|AAW34234.1|  517|Caenorhabditis elegans
           acetylcholine-gated chloride channelsubunit ACC-3
           protein.
          Length = 517

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = -1

Query: 372 SSVRICSSYKVVSQKVVFSINYLVSQK------QRNVRRVFFVSAKRSVQLTCVAFKFQN 211
           S +  C   K++  + +  +N L++         RN+ RV +V A     L C+ F F +
Sbjct: 292 SWISFCLGPKMIPARTMLGVNSLLALTFQFGNIMRNLPRVSYVKALDVWMLVCLTFVFCS 351

Query: 210 VSNLQTIG 187
           +  L  IG
Sbjct: 352 LLELAIIG 359


>U00031-1|AAZ82851.1|  330|Caenorhabditis elegans Hypothetical
           protein B0361.4 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 546 PGIIVNLSIGLHKIIFNFYXRKTNVALQFHKLHF*TTYTSTCF 418
           P IIV+    LHKII + +   +    +  K HF   ++S+ F
Sbjct: 256 PSIIVSNYFSLHKIISSIFAVNSFFFTEKRKAHFHFNFSSSSF 298


>AF078785-11|AAC27097.2|  294|Caenorhabditis elegans Hypothetical
           protein C04E12.12 protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -1

Query: 264 VSAKRSVQLTCVAFKFQNVSNLQTIGLTFHHVTASYRVVQLXAVGHTRHQTRFVNYT 94
           +S +  +  T   +K + V N++ +GL     T + RV ++ A G   ++T+ VNY+
Sbjct: 23  ISGRVVLSTTKEKYKARAV-NIKILGLAHTSWTDTERVRKVNAEGKEAYETKIVNYS 78


>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -1

Query: 264 VSAKRSVQLTCVAFKFQNVSNLQTIGLTFHHVTASYRVVQLXAVGHTRHQTRFVNYT 94
           +S +  +  T   +K + V N++ +GL     T + RV ++ A G   ++T+ VNY+
Sbjct: 23  ISGRVVLSTTKEKYKARAV-NIKILGLAHTSWTDTERVRKVNAEGKETYETKIVNYS 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,515,055
Number of Sequences: 27780
Number of extensions: 239098
Number of successful extensions: 584
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)