Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5676
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 183 3e-47
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 29 0.68
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 29 0.90
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 28 1.2
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 2.7
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 26 4.8
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 26 4.8
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 25 8.4
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 8.4
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch... 25 8.4
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 183 bits (445), Expect = 3e-47
Identities = 84/145 (57%), Positives = 104/145 (71%)
Frame = +3
Query: 126 DCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKIAQDRSNGKDYLLCDYNR 305
D ALDL+RRL P+ I KNL ++ + P + D LLSSVDQPLK+ +G YLLCD+NR
Sbjct: 5 DAALDLLRRLNPKDISKNLDTILSVAPDLADVLLSSVDQPLKVNTCSESGNQYLLCDFNR 64
Query: 306 DGDSYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQYREMYFEGGVSSVYLWDMDH 485
DGDSYRSPWSN YDPPL+DG + ++R+RKLE+ N A Y ++Y+EGGVSSVYLWD D
Sbjct: 65 DGDSYRSPWSNKYDPPLEDGLVSTDRVRKLEVSLNEAIRVYLDLYYEGGVSSVYLWDQDD 124
Query: 486 GFAGVILIKKAGDGSQKIKGCWDSI 560
+AG +LIKKA S WDSI
Sbjct: 125 SYAGAVLIKKA---STSNSSGWDSI 146
Score = 31.5 bits (68), Expect = 0.13
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +2
Query: 608 YKLTSTAMLWLQTNKES-----SGTMNLGGSLTRQAEQDSTVSD 724
Y+LTST +L+L + E S +NL G LTRQ Q +D
Sbjct: 162 YRLTSTIILFLSSGSEEQSALPSKALNLSGHLTRQTSQRLPAAD 205
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 29.1 bits (62), Expect = 0.68
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 186 DLIDLVPSMCDDLLSSVDQPLKIAQDRSNGKDYLLCDYNRDGDSYRSPWSNTYDPPLDD 362
D+ + VP DD + P + R + D Y+R GDSYRS S +D +D
Sbjct: 225 DIYNDVPIYADDEPEDIWGPSSKSTKRRDSADRS-SSYSRRGDSYRSNRSRAHDDDDED 282
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 28.7 bits (61), Expect = 0.90
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = -2
Query: 336 STKETCRSHRRDCNRIINSLSRCYDPEQSLEADLLMIIGRHTYSERGLSNLLNSFRSAEG 157
S E+C+S + I NS S + +L+A + IIG S + +L++S ++
Sbjct: 39 SNLESCQSSPLEVGNIYNSTSAS-EILSTLDAKYITIIGVIGSSNSSIQDLIDSVGNSNN 97
Query: 156 AASAS 142
AAS++
Sbjct: 98 AASSN 102
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 28.3 bits (60), Expect = 1.2
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +3
Query: 144 MRRLPPQQIEKNLTDLIDLVPSMCDDLLSS-VDQPLKIAQDRSNGKDYLLCDYNRDGDSY 320
M P + + + D+ D + S DD LS + + K D +G+ + ++ D
Sbjct: 14 MNDSPSTKEKADSVDISDYIVSHSDDSLSKDIKKDTKSFLDVEHGEISTVDEFEEDSPY- 72
Query: 321 RSPWSNTYDPPLDDGSMPSERLR 389
P PP DD SMP +R
Sbjct: 73 --PEVRAAVPPTDDPSMPCNTIR 93
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +3
Query: 246 LKIAQDRSNGKDYLLCDYNRDGDSYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQ 425
++I ++ SN L Y D P YD L+DG +E+ +++ N F Q
Sbjct: 1428 VRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKTQQV-WHVNPKFTQ 1486
Query: 426 YR 431
YR
Sbjct: 1487 YR 1488
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = -2
Query: 369 WSHHLMVGRKYSTKE-TCRSHRRDCNRIINSLSRCYDPEQSLEADLLMIIGRHTYSERGL 193
WS L + S E T + + ++I+ CYDP A L + H R +
Sbjct: 26 WSILLTNNKPMSGSENTLNNESHEMSQILKKSGLCYDPRMRFHA-TLSEVDDHPEDPRRV 84
Query: 192 SNLLNSFRSAEGAASASSP 136
+ + + A ++ SP
Sbjct: 85 LRVFEAIKKAGYVSNVPSP 103
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 4.8
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +3
Query: 279 DYLLCDYNRDGDSYRSPWS---NTYDPPLDDGSMPSERLRKLEIDANLAFDQYREMYFEG 449
DYLL NR S S WS N D L + + + +L K D N + + Y G
Sbjct: 240 DYLLFHLNRIDPSLYSKWSLPTNDVDEFLQNTAYKARKLTKGGFDENFVSNYVIQQYRIG 299
Query: 450 GVSSVYLWDMD 482
+ L +D
Sbjct: 300 RLGRFQLDTID 310
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 500 YSCKSMIHIPKVD*ANATFKVHLSILIKGEVGIYF*FSQAFRGHGAI 360
Y +SM+ +PKVD + + S I G YF F Q F H +
Sbjct: 77 YEFQSMVSLPKVDRVSKFLSDNES--ISQTSGDYFIFLQRFYAHAIL 121
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 315 SYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQYREMYFEGGVSSVY 467
S SP +Y PP S+ S R+ + ++ + YR++ E S+ Y
Sbjct: 64 SNNSPHRFSYSPPQHPASINSRRVASYTVQSSPSRTTYRQLPNEPQNSAAY 114
>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 77
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 507 IKKAGDGSQKIKGCWDSIPRSGGDREE 587
I+K DG ++ K WD+ GG EE
Sbjct: 4 IEKTPDGEEEEKDVWDTALEKGGCVEE 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,677
Number of Sequences: 5004
Number of extensions: 59971
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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