Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5676
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0157 + 14947935-14948210,14948448-14948518,14948891-149490...   136   2e-32
08_02_0703 - 20188489-20190246                                         32   0.41 
01_01_1159 + 9224331-9224473,9224586-9224727,9225412-9225483,922...    32   0.41 
05_04_0035 + 17378541-17381276                                         30   1.6  
12_02_0188 - 15158824-15159215,15159299-15159809,15159885-151600...    29   5.0  
07_03_0851 + 22012836-22014017,22016668-22016734,22016774-220168...    28   6.6  
04_04_0754 + 27803143-27803517,27805441-27806832,27806910-278071...    28   6.6  
12_02_1077 - 25871439-25871453,25872805-25872867,25872976-25873977     28   8.7  
06_02_0201 - 12960493-12960606,12960727-12960853,12961100-129612...    28   8.7  

>03_03_0157 +
           14947935-14948210,14948448-14948518,14948891-14949004,
           14949160-14949242,14949329-14949390,14949495-14949614,
           14950398-14950493,14950613-14950696
          Length = 301

 Score =  136 bits (329), Expect = 2e-32
 Identities = 58/106 (54%), Positives = 77/106 (72%), Gaps = 3/106 (2%)
 Frame = +3

Query: 252 IAQDRSNGKDYLLCDYNRDGDSYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQYR 431
           +  D+ + K+Y+LC+YNRD DSYRSPWSN YDPPL+DG++PSE +R LE++AN  F  YR
Sbjct: 93  VCMDKESVKEYILCEYNRDADSYRSPWSNKYDPPLEDGTVPSEEMRNLEVEANDVFSVYR 152

Query: 432 EMYFEGGVSSVYLW-DMDHGFAGVILIKKAGDGSQKIK--GCWDSI 560
           + Y+EGG+SSVY+W D D  F    LIKK G+G +     G WD+I
Sbjct: 153 DQYYEGGISSVYIWEDEDESFIACFLIKKDGEGKRGHMQIGSWDAI 198



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +3

Query: 123 MDCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKI 254
           M+ A+DLMRR+PP + E  L  L+ L+P    DLLS VD PL++
Sbjct: 1   MEAAMDLMRRMPPGRAETALNALLSLIPDHSLDLLSQVDLPLQV 44



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/41 (51%), Positives = 25/41 (60%)
 Frame = +2

Query: 602 AHYKLTSTAMLWLQTNKESSGTMNLGGSLTRQAEQDSTVSD 724
           AHY L ST ML L T+ + SGT NL GS+ RQ      V+D
Sbjct: 211 AHYCLNSTVMLSLTTDNKQSGTFNLSGSIRRQMSMTLAVAD 251


>08_02_0703 - 20188489-20190246
          Length = 585

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 237 LLMIIGRHTYSERGLSNLLNSFRSAEGAASASSPVH 130
           L +++G    SER L + +NS R+  G A +S PVH
Sbjct: 522 LRVVLGLGDDSERDLPDFMNSARNVNGIAGSSVPVH 557


>01_01_1159 +
           9224331-9224473,9224586-9224727,9225412-9225483,
           9225853-9225933,9226031-9226144,9226770-9226826,
           9227209-9227310,9227617-9227767,9227851-9227927,
           9228721-9228828,9229684-9229754,9230546-9230687,
           9230903-9231001,9231112-9231240,9231445-9231559,
           9231786-9231853,9233410-9233523,9233587-9233703,
           9234079-9234132,9234221-9234326,9235272-9235402,
           9235489-9235557
          Length = 753

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 144 MRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKIA 257
           +RR+  Q +++NLT+ ++L P + D +LS     LK A
Sbjct: 461 VRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAA 498


>05_04_0035 + 17378541-17381276
          Length = 911

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +3

Query: 120 QMDCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKIAQDRSNG 275
           +MD AL +  R+P ++I+ N T    LV ++C +    +D+  ++  D + G
Sbjct: 488 RMDDALKVYGRMPDKEIKPNTTTFETLVNALCKE--GDLDKARELVSDMAKG 537


>12_02_0188 -
           15158824-15159215,15159299-15159809,15159885-15160015,
           15160107-15160310,15160385-15161066,15161158-15161414,
           15161491-15161631,15161731-15162136
          Length = 907

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = -1

Query: 724 ITYCRVLFCLSSQTASKVHSATAFFISLKPQHCSRG---QLVVSIAS*NSSR-SPPLRGI 557
           + YC  +    +   +  HS  A F+  + +   R    Q VV I + N S      R +
Sbjct: 241 LIYCNGIMFFHNSVDATGHSQDANFVLKEIRKVVRELGPQHVVQIITDNGSNYKKACRLL 300

Query: 556 ESQHPLIFWEPSPAFLINI 500
             ++P I W+P  A  IN+
Sbjct: 301 RQEYPTIVWQPCVAHTINL 319


>07_03_0851 +
           22012836-22014017,22016668-22016734,22016774-22016868,
           22017304-22017717
          Length = 585

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 198 LVPSMCDDLLSSVDQPLKIAQDR 266
           L+P + DDL +SVD+P+++  DR
Sbjct: 153 LLPPIPDDLAASVDRPVRVHLDR 175


>04_04_0754 + 27803143-27803517,27805441-27806832,27806910-27807164,
            27807246-27807368,27807643-27808119,27808217-27808603
          Length = 1002

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 157  GSLRIKSSAQSICWSLILKFYYS 89
            G+    SS   +CWSL+L++Y S
Sbjct: 975  GAAMAASSVSVVCWSLLLRYYKS 997


>12_02_1077 - 25871439-25871453,25872805-25872867,25872976-25873977
          Length = 359

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 613 LVVSIAS*NSSRSPPLRGIESQHPLIFWEPSPAFLINIT 497
           LVVSI S +SS + P      + PL    PSPA ++ +T
Sbjct: 289 LVVSIGSGSSSAATPSTAAGWRTPLPSRSPSPAEMVRLT 327


>06_02_0201 -
           12960493-12960606,12960727-12960853,12961100-12961276,
           12961864-12961975,12964141-12964144
          Length = 177

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +3

Query: 132 ALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKIAQDRSNGKDY 284
           A D++ +L  + + +     +D+V ++CDD +   +  + I + R+N  +Y
Sbjct: 126 ANDILEQLATRVLHEEHQVYVDVVTALCDDRIVWREDGVPIIRSRTNPDEY 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,397,677
Number of Sequences: 37544
Number of extensions: 411123
Number of successful extensions: 1070
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)