Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5676
         (730 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U35240-1|AAB38521.1|  276|Drosophila melanogaster capping protei...   290   1e-78
AY069829-1|AAL39974.1|  276|Drosophila melanogaster SD07714p pro...   290   1e-78
AE014134-280|AAF51349.1|  276|Drosophila melanogaster CG17158-PA...   290   1e-78
AY061244-1|AAL28792.1|  664|Drosophila melanogaster LD18373p pro...    29   4.9  
AE014298-1641|AAF48061.1|  664|Drosophila melanogaster CG11696-P...    29   4.9  

>U35240-1|AAB38521.1|  276|Drosophila melanogaster capping protein
           beta protein.
          Length = 276

 Score =  290 bits (711), Expect = 1e-78
 Identities = 128/151 (84%), Positives = 141/151 (93%)
 Frame = +3

Query: 108 MSDQQMDCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKIAQDRSNGKDYL 287
           MS+ QMDCALDLMRRLPPQQIEKNL DLIDL P +C+DLLSSVDQPLKIA+D+ +GKDYL
Sbjct: 1   MSEMQMDCALDLMRRLPPQQIEKNLIDLIDLAPDLCEDLLSSVDQPLKIAKDKEHGKDYL 60

Query: 288 LCDYNRDGDSYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQYREMYFEGGVSSVY 467
           LCDYNRDGDSYRSPWSN+Y PPL+DG MPSERLRKLEI+AN AFDQYREMY+EGGVSSVY
Sbjct: 61  LCDYNRDGDSYRSPWSNSYYPPLEDGQMPSERLRKLEIEANYAFDQYREMYYEGGVSSVY 120

Query: 468 LWDMDHGFAGVILIKKAGDGSQKIKGCWDSI 560
           LWD+DHGFA VILIKKAGDGS+ I+GCWDSI
Sbjct: 121 LWDLDHGFAAVILIKKAGDGSKMIRGCWDSI 151



 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 37/47 (78%), Positives = 42/47 (89%)
 Frame = +2

Query: 584 RVSGRNAHYKLTSTAMLWLQTNKESSGTMNLGGSLTRQAEQDSTVSD 724
           + +GR AHYKLTSTAMLWLQTNK+ SGTMNLGGSLTRQ EQD+ VS+
Sbjct: 159 KTTGRTAHYKLTSTAMLWLQTNKQGSGTMNLGGSLTRQQEQDANVSE 205


>AY069829-1|AAL39974.1|  276|Drosophila melanogaster SD07714p
           protein.
          Length = 276

 Score =  290 bits (711), Expect = 1e-78
 Identities = 128/151 (84%), Positives = 141/151 (93%)
 Frame = +3

Query: 108 MSDQQMDCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKIAQDRSNGKDYL 287
           MS+ QMDCALDLMRRLPPQQIEKNL DLIDL P +C+DLLSSVDQPLKIA+D+ +GKDYL
Sbjct: 1   MSEMQMDCALDLMRRLPPQQIEKNLIDLIDLAPDLCEDLLSSVDQPLKIAKDKEHGKDYL 60

Query: 288 LCDYNRDGDSYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQYREMYFEGGVSSVY 467
           LCDYNRDGDSYRSPWSN+Y PPL+DG MPSERLRKLEI+AN AFDQYREMY+EGGVSSVY
Sbjct: 61  LCDYNRDGDSYRSPWSNSYYPPLEDGQMPSERLRKLEIEANYAFDQYREMYYEGGVSSVY 120

Query: 468 LWDMDHGFAGVILIKKAGDGSQKIKGCWDSI 560
           LWD+DHGFA VILIKKAGDGS+ I+GCWDSI
Sbjct: 121 LWDLDHGFAAVILIKKAGDGSKMIRGCWDSI 151



 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 37/47 (78%), Positives = 42/47 (89%)
 Frame = +2

Query: 584 RVSGRNAHYKLTSTAMLWLQTNKESSGTMNLGGSLTRQAEQDSTVSD 724
           + +GR AHYKLTSTAMLWLQTNK+ SGTMNLGGSLTRQ EQD+ VS+
Sbjct: 159 KTTGRTAHYKLTSTAMLWLQTNKQGSGTMNLGGSLTRQQEQDANVSE 205


>AE014134-280|AAF51349.1|  276|Drosophila melanogaster CG17158-PA
           protein.
          Length = 276

 Score =  290 bits (711), Expect = 1e-78
 Identities = 128/151 (84%), Positives = 141/151 (93%)
 Frame = +3

Query: 108 MSDQQMDCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKIAQDRSNGKDYL 287
           MS+ QMDCALDLMRRLPPQQIEKNL DLIDL P +C+DLLSSVDQPLKIA+D+ +GKDYL
Sbjct: 1   MSEMQMDCALDLMRRLPPQQIEKNLIDLIDLAPDLCEDLLSSVDQPLKIAKDKEHGKDYL 60

Query: 288 LCDYNRDGDSYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQYREMYFEGGVSSVY 467
           LCDYNRDGDSYRSPWSN+Y PPL+DG MPSERLRKLEI+AN AFDQYREMY+EGGVSSVY
Sbjct: 61  LCDYNRDGDSYRSPWSNSYYPPLEDGQMPSERLRKLEIEANYAFDQYREMYYEGGVSSVY 120

Query: 468 LWDMDHGFAGVILIKKAGDGSQKIKGCWDSI 560
           LWD+DHGFA VILIKKAGDGS+ I+GCWDSI
Sbjct: 121 LWDLDHGFAAVILIKKAGDGSKMIRGCWDSI 151



 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 37/47 (78%), Positives = 42/47 (89%)
 Frame = +2

Query: 584 RVSGRNAHYKLTSTAMLWLQTNKESSGTMNLGGSLTRQAEQDSTVSD 724
           + +GR AHYKLTSTAMLWLQTNK+ SGTMNLGGSLTRQ EQD+ VS+
Sbjct: 159 KTTGRTAHYKLTSTAMLWLQTNKQGSGTMNLGGSLTRQQEQDANVSE 205


>AY061244-1|AAL28792.1|  664|Drosophila melanogaster LD18373p
           protein.
          Length = 664

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
 Frame = +3

Query: 165 QIEKNLTDLIDLVPSMCDDLLSSVDQPL--KIAQDRSNGKDYLLCDYNRD----GDSYRS 326
           Q++  L +L +L       ++ + + P+  K++ +  + KD++LC+   D    GD   S
Sbjct: 83  QLKTELPELPELTEPEPALVVWNTESPIEPKLSYEGDDIKDHILCEPVIDALSAGDEKDS 142

Query: 327 PWSNTYDPPLDDGSMPSE 380
            + +T++P  +  S P E
Sbjct: 143 DYGDTFEPDFEPESQPDE 160


>AE014298-1641|AAF48061.1|  664|Drosophila melanogaster CG11696-PA
           protein.
          Length = 664

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
 Frame = +3

Query: 165 QIEKNLTDLIDLVPSMCDDLLSSVDQPL--KIAQDRSNGKDYLLCDYNRD----GDSYRS 326
           Q++  L +L +L       ++ + + P+  K++ +  + KD++LC+   D    GD   S
Sbjct: 83  QLKTELPELPELTEPEPALVVWNTESPIEPKLSYEGDDIKDHILCEPVIDALSAGDEKDS 142

Query: 327 PWSNTYDPPLDDGSMPSE 380
            + +T++P  +  S P E
Sbjct: 143 DYGDTFEPDFEPESQPDE 160


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,885,065
Number of Sequences: 53049
Number of extensions: 673974
Number of successful extensions: 1549
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)