Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5676
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical pr...   262   1e-70
Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein...   262   1e-70
Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein...   262   1e-70
U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF040646-3|AAK31541.1|  946|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical
           protein M106.5 protein.
          Length = 270

 Score =  262 bits (643), Expect = 1e-70
 Identities = 113/152 (74%), Positives = 133/152 (87%), Gaps = 1/152 (0%)
 Frame = +3

Query: 108 MSDQQMDCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKIAQDRSNGKDYL 287
           M +QQ+DCALDLMRRLPPQ  +KNLTDLIDL P + DDLLS++DQPLKIA DR  GK YL
Sbjct: 1   MGEQQLDCALDLMRRLPPQHCDKNLTDLIDLCPHLVDDLLSTIDQPLKIAADRETGKQYL 60

Query: 288 LCDYNRDGDSYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQYREMYFEGGVSSVY 467
           LCDYNRDGDSYRSPWSNTYDPPL+DG +PSE+ RK+EI+AN AF+ YR++YFEGGVSSVY
Sbjct: 61  LCDYNRDGDSYRSPWSNTYDPPLEDGQLPSEKRRKMEIEANAAFESYRDLYFEGGVSSVY 120

Query: 468 LWDMDH-GFAGVILIKKAGDGSQKIKGCWDSI 560
            WD+D+ GFAG++LIKK GDG++ I GCWDSI
Sbjct: 121 FWDLDNGGFAGIVLIKKEGDGAKNITGCWDSI 152



 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 33/43 (76%), Positives = 36/43 (83%)
 Frame = +2

Query: 596 RNAHYKLTSTAMLWLQTNKESSGTMNLGGSLTRQAEQDSTVSD 724
           R AHYKLTST MLWLQTNK SSG MNLGGSLTRQ E D+ ++D
Sbjct: 162 RQAHYKLTSTIMLWLQTNKSSSGVMNLGGSLTRQHEMDAPIND 204


>Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score =  262 bits (643), Expect = 1e-70
 Identities = 113/152 (74%), Positives = 133/152 (87%), Gaps = 1/152 (0%)
 Frame = +3

Query: 108 MSDQQMDCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKIAQDRSNGKDYL 287
           M +QQ+DCALDLMRRLPPQ  +KNLTDLIDL P + DDLLS++DQPLKIA DR  GK YL
Sbjct: 1   MGEQQLDCALDLMRRLPPQHCDKNLTDLIDLCPHLVDDLLSTIDQPLKIAADRETGKQYL 60

Query: 288 LCDYNRDGDSYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQYREMYFEGGVSSVY 467
           LCDYNRDGDSYRSPWSNTYDPPL+DG +PSE+ RK+EI+AN AF+ YR++YFEGGVSSVY
Sbjct: 61  LCDYNRDGDSYRSPWSNTYDPPLEDGQLPSEKRRKMEIEANAAFESYRDLYFEGGVSSVY 120

Query: 468 LWDMDH-GFAGVILIKKAGDGSQKIKGCWDSI 560
            WD+D+ GFAG++LIKK GDG++ I GCWDSI
Sbjct: 121 FWDLDNGGFAGIVLIKKEGDGAKNITGCWDSI 152



 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 33/43 (76%), Positives = 36/43 (83%)
 Frame = +2

Query: 596 RNAHYKLTSTAMLWLQTNKESSGTMNLGGSLTRQAEQDSTVSD 724
           R AHYKLTST MLWLQTNK SSG MNLGGSLTRQ E D+ ++D
Sbjct: 162 RQAHYKLTSTIMLWLQTNKSSSGVMNLGGSLTRQHEMDAPIND 204


>Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score =  262 bits (643), Expect = 1e-70
 Identities = 113/152 (74%), Positives = 133/152 (87%), Gaps = 1/152 (0%)
 Frame = +3

Query: 108 MSDQQMDCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKIAQDRSNGKDYL 287
           M +QQ+DCALDLMRRLPPQ  +KNLTDLIDL P + DDLLS++DQPLKIA DR  GK YL
Sbjct: 1   MGEQQLDCALDLMRRLPPQHCDKNLTDLIDLCPHLVDDLLSTIDQPLKIAADRETGKQYL 60

Query: 288 LCDYNRDGDSYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQYREMYFEGGVSSVY 467
           LCDYNRDGDSYRSPWSNTYDPPL+DG +PSE+ RK+EI+AN AF+ YR++YFEGGVSSVY
Sbjct: 61  LCDYNRDGDSYRSPWSNTYDPPLEDGQLPSEKRRKMEIEANAAFESYRDLYFEGGVSSVY 120

Query: 468 LWDMDH-GFAGVILIKKAGDGSQKIKGCWDSI 560
            WD+D+ GFAG++LIKK GDG++ I GCWDSI
Sbjct: 121 FWDLDNGGFAGIVLIKKEGDGAKNITGCWDSI 152



 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 33/43 (76%), Positives = 36/43 (83%)
 Frame = +2

Query: 596 RNAHYKLTSTAMLWLQTNKESSGTMNLGGSLTRQAEQDSTVSD 724
           R AHYKLTST MLWLQTNK SSG MNLGGSLTRQ E D+ ++D
Sbjct: 162 RQAHYKLTSTIMLWLQTNKSSSGVMNLGGSLTRQHEMDAPIND 204


>U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical
           protein F46C8.7 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 333 TKETCRSHRRDCNRIINSLSRCYDPEQSLEAD 238
           T  T R H ++C ++I+S+ + +D E+S   D
Sbjct: 120 TTSTLRDHSKNCVKMIDSVIKNFDVEKSKRTD 151


>AF040646-3|AAK31541.1|  946|Caenorhabditis elegans Hypothetical
           protein H17B01.4a protein.
          Length = 946

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -2

Query: 270 CYDPEQSLEADLLMIIGRHTYSERGLSNLLNSFRSAEGAASASS 139
           C    +S+E  ++ ++   T +  G+++ +NS RSA G+ SA+S
Sbjct: 431 CRQITRSIEK-VIYVVTSITKNGNGVADFINSVRSASGSGSAAS 473


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,160,887
Number of Sequences: 27780
Number of extensions: 340107
Number of successful extensions: 948
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)