Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5673
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 79 6e-16
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c... 65 1e-11
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|... 44 1e-05
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha... 29 0.78
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 26 4.2
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 7.3
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 25 7.3
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 9.6
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.6
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 25 9.6
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 79.0 bits (186), Expect = 6e-16
Identities = 42/132 (31%), Positives = 70/132 (53%)
Frame = +2
Query: 128 TEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDT 307
T + ++ H + +D RSDGRS ++R + + + +S A+GSA +R + GIK EI
Sbjct: 21 TPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAE 80
Query: 308 PKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVE 487
P + P+ G I ++ S + +F+ +LA +S + + S +L+ LCI E
Sbjct: 81 PFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIFE 140
Query: 488 GKQCWKLYVDIL 523
K W LY DI+
Sbjct: 141 KKAAWVLYADII 152
>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 291
Score = 64.9 bits (151), Expect = 1e-11
Identities = 35/133 (26%), Positives = 62/133 (46%)
Frame = +2
Query: 122 SSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEI 301
S K F+++ +++ R DGR D+R +E++ G + +T ++ I TEI
Sbjct: 8 SLNNKEFVLNSLEKGLRLDGRQLSDFRSLEIQ---FGKEYGQVDVSFGHTRVMARITTEI 64
Query: 302 DTPKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCI 481
P D+P G + + A FE + IS +++A S A D + LCI
Sbjct: 65 TKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLCI 124
Query: 482 VEGKQCWKLYVDI 520
+ G++CW + +
Sbjct: 125 ISGQKCWHVRASV 137
>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 44.4 bits (100), Expect = 1e-05
Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Frame = +2
Query: 170 RSDGRSNIDYRPMELETDVVSHASGSARLRLANT-DILVGIKTEIDTPKPDKPDMGKIEF 346
R+DGRS RP+ + DV+ +GSAR++ A++ +I++G+K E+ P+ GK
Sbjct: 23 RNDGRSIDQLRPLSGQVDVLPGTNGSARVKWASSVEIVIGVKAEVGDATPEG---GKYVA 79
Query: 347 FVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQCWKLYVDILV 526
V+ S + + + R + + S +++ +Q ++ LK + W ++VD +V
Sbjct: 80 SVEISPSVS--IQNRETDEIPSFLTSALQDLLNALAVDYLK----FTPSKAWIIHVDAVV 133
>SPAC19D5.02c |||peroxisomal membrane protein Pex22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 28.7 bits (61), Expect = 0.78
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -2
Query: 407 LNFLHHALRIPVWHLLSNQQKTQFFPY 327
L F+ HAL IP+ +S+ ++T+ FP+
Sbjct: 11 LAFVAHALEIPISCAVSHNEQTEIFPH 37
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 161 EDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDIL 280
E R+DGR + R + + +GSA + L NT +L
Sbjct: 10 EGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVL 49
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 339 IFPISGLSGFGVSISVLMPTKMSVFARRSRAEPLAWLTTSVS 214
+FPI +SG G ++ PT + F + L+W+ + S
Sbjct: 735 MFPIHRISGVGSEVNESTPTFATNFETYTMVFQLSWILHTAS 776
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 88 NRNNKHGRTVIKFYRKSFYCSRCTRGL 168
N NKHGR +KF R C C+R +
Sbjct: 8 NGRNKHGRGHVKFVR----CINCSRAV 30
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 377 EFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVE 487
E G+ + LA S T Q +HS Q+F + +E
Sbjct: 74 EESGKNLQKLAKSYLETFQSKHHSPQSFSASVITSME 110
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 380 FEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQ 496
F GR ++L SSI TM+ S +F+ + V+ K+
Sbjct: 50 FGGRSFDSLLSSIKETMEEKKKKSSSFEKRDKRRVQLKE 88
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 9.6
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 323 PDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGK 493
P+ GK V CS++ +G G + SSIS ++R H + F+ LCI+ K
Sbjct: 91 PEEGKT-LMVACSSD-----KGLCG-GIHSSISRLIRRELHDPKTFENTSLCILGEK 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,539
Number of Sequences: 5004
Number of extensions: 54859
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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