Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5673
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0222 + 11880333-11880551,11880667-11880736,11880839-118809... 71 1e-12
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 64 1e-10
12_02_0002 + 12119832-12120003,12120620-12120866,12121011-121210... 50 2e-06
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825... 39 0.003
08_01_0115 - 929926-930012,930093-930242,930336-930424,930696-93... 39 0.004
08_02_0077 - 11979497-11979654,11980012-11982178 35 0.066
03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671... 32 0.35
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132... 29 4.3
07_01_0488 - 3678329-3678577,3678769-3678810,3678891-3678944,367... 28 5.7
03_02_0963 - 12769715-12769859,12770639-12770889 28 7.5
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422... 27 9.9
>11_03_0222 +
11880333-11880551,11880667-11880736,11880839-11880944,
11881490-11881556,11881597-11881692
Length = 185
Score = 70.5 bits (165), Expect = 1e-12
Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
Frame = +2
Query: 140 FIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPKPD 319
F+ ++E R D R + RP + VS A GSA +RL +T +L IK E+ +P +
Sbjct: 30 FLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGE 89
Query: 320 KPDMGKI--EFFVD--CSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVE 487
PD G I EF + CS P GR E +A IS ++ SS +LK+LC++
Sbjct: 90 APDEGSIAVEFHMPPICSPLVRP---GRPAE-VAPVISKNLEDILMSSGMLNLKELCLIS 145
Query: 488 GKQCWKLYV 514
GK W Y+
Sbjct: 146 GKASWLAYL 154
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 63.7 bits (148), Expect = 1e-10
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +2
Query: 242 GSARLRLANTDILVGIKTEIDTPKPDKPDMGKIEFFVDCSANATPEFE-GRGGENLASSI 418
GSA ++L +T ++ ++ P D+P+ G + F + S A P FE GR GE+ A +
Sbjct: 74 GSAEVQLGDTRVMGYATAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGES-AIEL 132
Query: 419 SNTMQRAYHSSQAFDLKQLCIVEGKQCWKLYVDI 520
+ R S+A D++ LC+V GK W + VD+
Sbjct: 133 GRVVDRGLRESRAVDMESLCVVAGKHVWSVRVDL 166
>12_02_0002 +
12119832-12120003,12120620-12120866,12121011-12121050,
12121584-12121676,12124850-12124928,12124973-12125019,
12126178-12126266,12126353-12126424,12126617-12126710,
12127167-12127206,12127321-12127445,12130472-12130615,
12131510-12131740
Length = 490
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +2
Query: 290 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQR 436
+ E+ P PD GK+ FVDCS A P FEGRG E ++ + +QR
Sbjct: 153 QAELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQR 201
Score = 35.5 bits (78), Expect = 0.037
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 455 AFDLKQLCIVEGKQCWKLYVDILV 526
A DL L +V+GK CW LY+D LV
Sbjct: 327 AIDLSSLIVVDGKVCWDLYIDGLV 350
>03_06_0648 +
35280492-35280645,35281742-35281820,35282491-35282593,
35282695-35282815,35283144-35283232,35283324-35283473,
35285842-35287161
Length = 671
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 170 RSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPKPD-KPDMGKIEF 346
R+DGRS D RP ++T + ASGSA T ++V + ++ K D G++
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 98
Query: 347 FVDCSANATPEFEGRGGEN 403
V + ATP G+G +N
Sbjct: 99 NVSYTTFATP-IRGQGTDN 116
>08_01_0115 -
929926-930012,930093-930242,930336-930424,930696-930816,
930918-931020,931685-931763,933879-934038
Length = 262
Score = 38.7 bits (86), Expect = 0.004
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 170 RSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPKPD-KPDMGKIEF 346
R+DGRS D RP ++T + ASGSA T ++V + ++ K D G++
Sbjct: 41 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 100
Query: 347 FVDCSANATPEFEGRGGEN 403
V + ATP G+G +N
Sbjct: 101 NVSYTTFATP-IRGQGMDN 118
>08_02_0077 - 11979497-11979654,11980012-11982178
Length = 774
Score = 34.7 bits (76), Expect = 0.066
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 194 DYRPME-LETDVVSHASGSARLRLANTDILVGIKTEIDTPKPDKPDMGKIEFFVDCSANA 370
DY E E + +G R D V +K EI T +P+ +GK ++ +D N
Sbjct: 201 DYEQSEKTELKINGQENGENRAGKEQFDCNVPVKQEIRTDQPEANGVGKHQYHMDDKENK 260
Query: 371 TPEFEGRGGENLASSISNTMQRA 439
+ EG+ G+ S ++RA
Sbjct: 261 GLDKEGKNGKPGKHSAGKKIRRA 283
>03_06_0727 -
35766252-35766481,35766592-35766721,35767049-35767116,
35767179-35767217,35767677-35767761,35768097-35768197,
35768292-35768511
Length = 290
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 161 EDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGI-KTEIDTPKPDKPDMGK 337
E+ R+DGR+ RP + + A GSAR +T +L + + T K + P+
Sbjct: 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKAS 61
Query: 338 IE 343
IE
Sbjct: 62 IE 63
>12_01_0179 -
1319291-1319332,1319884-1320579,1322759-1323207,
1323291-1324903,1324991-1325077,1326983-1327251
Length = 1051
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 287 IKTEIDTPKPDKPDMGKIEFFVDCSA--NATPEFEGRGGENLASSISNTMQR 436
+K E + +P PD G F+D S+ ++ P F E L SS SN R
Sbjct: 712 VKLEDELSEPLSPDSGTGTHFIDGSSVEDSDPRFAQLNDEALVSSTSNATCR 763
>07_01_0488 -
3678329-3678577,3678769-3678810,3678891-3678944,
3679149-3679212,3679316-3679410,3679477-3679584,
3679679-3679752,3680338-3680410,3680539-3680586,
3680694-3680877,3681262-3681440,3682167-3682259,
3682738-3682851,3683570-3683644,3683852-3684112,
3684821-3684934,3685473-3685529,3686668-3686863,
3686922-3686986,3687112-3687195,3688155-3688223,
3688545-3688844
Length = 865
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 170 RSDGRSNIDYRPMELETDVVSHASGSARLRLANTDIL 280
RSDGRS + RP+ + ++ A GSA T L
Sbjct: 411 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQAL 447
>03_02_0963 - 12769715-12769859,12770639-12770889
Length = 131
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 3 IRHEGGVAGNLGEFLVNINDKTFVT 77
I+ GG AGNLGE + DKT VT
Sbjct: 50 IKVAGGKAGNLGESVTVSRDKTKVT 74
>01_03_0076 -
12241408-12241545,12241719-12241790,12242173-12242289,
12243307-12245127,12245361-12245810
Length = 865
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 260 DEAALSHLRGSLHLFL 213
DEA L HL+GSLH F+
Sbjct: 276 DEAHLQHLQGSLHAFV 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,402,723
Number of Sequences: 37544
Number of extensions: 324183
Number of successful extensions: 753
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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