Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5673
(657 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC012831-1|AAH12831.1| 291|Homo sapiens exosome component 7 pro... 187 4e-47
D29958-1|BAA06226.1| 290|Homo sapiens KIAA0116 protein. 185 1e-46
BC142978-1|AAI42979.1| 439|Homo sapiens exosome component 9 pro... 72 2e-12
AJ517294-1|CAD56889.1| 456|Homo sapiens polymyositis/scleroderm... 72 2e-12
AJ505989-1|CAD44530.1| 439|Homo sapiens polymyositis/scleroderm... 72 2e-12
BC020773-1|AAH20773.1| 276|Homo sapiens exosome component 8 pro... 71 5e-12
AL138706-8|CAI14013.1| 275|Homo sapiens RP11-421P11.3 protein. 71 5e-12
AF025438-1|AAC39558.1| 265|Homo sapiens Opa-interacting protein... 71 5e-12
U09215-1|AAA18832.1| 372|Homo sapiens PM-Scl-75 autoantigen pro... 40 0.006
M58460-1|AAA58384.1| 355|Homo sapiens autoantigen protein. 40 0.006
AC079341-2|AAY40968.1| 355|Homo sapiens unknown protein. 40 0.006
BC089434-1|AAH89434.1| 737|Homo sapiens regeneration associated... 31 4.8
AY358346-1|AAQ88712.1| 720|Homo sapiens ELGC699 protein. 31 4.8
AK027841-1|BAB55404.1| 737|Homo sapiens protein ( Homo sapiens ... 31 4.8
D79992-1|BAA11487.2| 2090|Homo sapiens KIAA0170 protein. 30 6.3
BX248307-2|CAM25929.1| 2089|Homo sapiens mediator of DNA damage ... 30 6.3
BC131491-1|AAI31492.1| 778|Homo sapiens MDC1 protein protein. 30 6.3
BA000025-70|BAB63322.1| 2090|Homo sapiens KIAA0170 protein. 30 6.3
AL845353-22|CAI41891.1| 2089|Homo sapiens mediator of DNA damage... 30 6.3
AL845353-21|CAI41890.1| 1244|Homo sapiens mediator of DNA damage... 30 6.3
AL662848-3|CAI17440.1| 2089|Homo sapiens mediator of DNA damage ... 30 6.3
AL662797-7|CAI18195.1| 2089|Homo sapiens mediator of DNA damage ... 30 6.3
AB103605-1|BAF31266.1| 2089|Homo sapiens KIAA0170 protein protein. 30 6.3
AB088099-1|BAC54931.1| 2089|Homo sapiens homologue to Drosophila... 30 6.3
>BC012831-1|AAH12831.1| 291|Homo sapiens exosome component 7
protein.
Length = 291
Score = 187 bits (455), Expect = 4e-47
Identities = 85/141 (60%), Positives = 111/141 (78%)
Frame = +2
Query: 104 MAGLLLSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILV 283
MA + LS EKV+IVHGVQED R DGR DYR +E+ETDVVS+ SGSAR++L +TDILV
Sbjct: 1 MASVTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILV 60
Query: 284 GIKTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFD 463
G+K E+ TPK +KP+ G +EFFVDCSA+ATPEFEGRGG++L + I+NT+ R +++ + D
Sbjct: 61 GVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVD 120
Query: 464 LKQLCIVEGKQCWKLYVDILV 526
LK LCI + CW LYVD+L+
Sbjct: 121 LKTLCISPREHCWVLYVDVLL 141
>D29958-1|BAA06226.1| 290|Homo sapiens KIAA0116 protein.
Length = 290
Score = 185 bits (450), Expect = 1e-46
Identities = 84/140 (60%), Positives = 110/140 (78%)
Frame = +2
Query: 107 AGLLLSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVG 286
A + LS EKV+IVHGVQED R DGR DYR +E+ETDVVS+ SGSAR++L +TDILVG
Sbjct: 1 ASVTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVG 60
Query: 287 IKTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDL 466
+K E+ TPK +KP+ G +EFFVDCSA+ATPEFEGRGG++L + I+NT+ R +++ + DL
Sbjct: 61 VKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDL 120
Query: 467 KQLCIVEGKQCWKLYVDILV 526
K LCI + CW LYVD+L+
Sbjct: 121 KTLCISPREHCWVLYVDVLL 140
>BC142978-1|AAI42979.1| 439|Homo sapiens exosome component 9
protein.
Length = 439
Score = 71.7 bits (168), Expect = 2e-12
Identities = 38/134 (28%), Positives = 69/134 (51%)
Frame = +2
Query: 119 LSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTE 298
LS+ E+ F++ ++E R DGR DYR + + G + L T +L + E
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGT---DYGCCIVELGKTRVLGQVSCE 62
Query: 299 IDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLC 478
+ +PK ++ G + F ++ S A P FE +L ++ M+R +S+ D + LC
Sbjct: 63 LVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLC 122
Query: 479 IVEGKQCWKLYVDI 520
+V G++ W++ VD+
Sbjct: 123 VVAGEKVWQIRVDL 136
>AJ517294-1|CAD56889.1| 456|Homo sapiens polymyositis/scleroderma
autoantigen 1 protein.
Length = 456
Score = 71.7 bits (168), Expect = 2e-12
Identities = 38/134 (28%), Positives = 69/134 (51%)
Frame = +2
Query: 119 LSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTE 298
LS+ E+ F++ ++E R DGR DYR + + G + L T +L + E
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGT---DYGCCIVELGKTRVLGQVSCE 62
Query: 299 IDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLC 478
+ +PK ++ G + F ++ S A P FE +L ++ M+R +S+ D + LC
Sbjct: 63 LVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLC 122
Query: 479 IVEGKQCWKLYVDI 520
+V G++ W++ VD+
Sbjct: 123 VVAGEKVWQIRVDL 136
>AJ505989-1|CAD44530.1| 439|Homo sapiens polymyositis/scleroderma
autoantigen 1 protein.
Length = 439
Score = 71.7 bits (168), Expect = 2e-12
Identities = 38/134 (28%), Positives = 69/134 (51%)
Frame = +2
Query: 119 LSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTE 298
LS+ E+ F++ ++E R DGR DYR + + G + L T +L + E
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGT---DYGCCIVELGKTRVLGQVSCE 62
Query: 299 IDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLC 478
+ +PK ++ G + F ++ S A P FE +L ++ M+R +S+ D + LC
Sbjct: 63 LVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLC 122
Query: 479 IVEGKQCWKLYVDI 520
+V G++ W++ VD+
Sbjct: 123 VVAGEKVWQIRVDL 136
>BC020773-1|AAH20773.1| 276|Homo sapiens exosome component 8
protein.
Length = 276
Score = 70.5 bits (165), Expect = 5e-12
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Frame = +2
Query: 155 VQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPKPDKPDMG 334
++E+ R DGR ++R + +S A GSA ++L NT ++ G+K E P D PD G
Sbjct: 18 LKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKG 77
Query: 335 KIEFFVDCSANATPEFE-GRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQCWKLY 511
+ VD + F G GE A S + +SQ + LCI GK W LY
Sbjct: 78 YVVPNVDLPPLCSSRFRSGPPGEE-AQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136
Query: 512 VDILVC 529
D L+C
Sbjct: 137 CD-LIC 141
>AL138706-8|CAI14013.1| 275|Homo sapiens RP11-421P11.3 protein.
Length = 275
Score = 70.5 bits (165), Expect = 5e-12
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Frame = +2
Query: 155 VQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPKPDKPDMG 334
++E+ R DGR ++R + +S A GSA ++L NT ++ G+K E P D PD G
Sbjct: 18 LKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKG 77
Query: 335 KIEFFVDCSANATPEFE-GRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQCWKLY 511
+ VD + F G GE A S + +SQ + LCI GK W LY
Sbjct: 78 YVVPNVDLPPLCSSRFRSGPPGEE-AQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136
Query: 512 VDILVC 529
D L+C
Sbjct: 137 CD-LIC 141
>AF025438-1|AAC39558.1| 265|Homo sapiens Opa-interacting protein
OIP2 protein.
Length = 265
Score = 70.5 bits (165), Expect = 5e-12
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Frame = +2
Query: 155 VQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPKPDKPDMG 334
++E+ R DGR ++R + +S A GSA ++L NT ++ G+K E P D PD G
Sbjct: 16 LKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKG 75
Query: 335 KIEFFVDCSANATPEFE-GRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQCWKLY 511
+ VD + F G GE A S + +SQ + LCI GK W LY
Sbjct: 76 YVVPNVDLPPLCSSRFRSGPPGEE-AQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 134
Query: 512 VDILVC 529
D L+C
Sbjct: 135 CD-LIC 139
>U09215-1|AAA18832.1| 372|Homo sapiens PM-Scl-75 autoantigen
protein.
Length = 372
Score = 40.3 bits (90), Expect = 0.006
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 368 ATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQCWKLYVDI 520
A P FE +L ++ M+R +S+ D + LC+V G++ W++ VD+
Sbjct: 2 AAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDL 52
>M58460-1|AAA58384.1| 355|Homo sapiens autoantigen protein.
Length = 355
Score = 40.3 bits (90), Expect = 0.006
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 368 ATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQCWKLYVDI 520
A P FE +L ++ M+R +S+ D + LC+V G++ W++ VD+
Sbjct: 2 AAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDL 52
>AC079341-2|AAY40968.1| 355|Homo sapiens unknown protein.
Length = 355
Score = 40.3 bits (90), Expect = 0.006
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 368 ATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQCWKLYVDI 520
A P FE +L ++ M+R +S+ D + LC+V G++ W++ VD+
Sbjct: 2 AAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDL 52
>BC089434-1|AAH89434.1| 737|Homo sapiens regeneration associated
muscle protease protein.
Length = 737
Score = 30.7 bits (66), Expect = 4.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 91 RNNKHGRTVIKFYRKSFYCSRCTRG 165
RN G T+ FY K FYC+ C G
Sbjct: 95 RNGSWGGTLDDFYVKGFYCAECRAG 119
>AY358346-1|AAQ88712.1| 720|Homo sapiens ELGC699 protein.
Length = 720
Score = 30.7 bits (66), Expect = 4.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 91 RNNKHGRTVIKFYRKSFYCSRCTRG 165
RN G T+ FY K FYC+ C G
Sbjct: 95 RNGSWGGTLDDFYVKGFYCAECRAG 119
>AK027841-1|BAB55404.1| 737|Homo sapiens protein ( Homo sapiens
cDNA FLJ14935 fis, clone PLACE1009992, weakly similar to
LIMULUS CLOTTING FACTOR C PRECURSOR (EC 3.4.21.84). ).
Length = 737
Score = 30.7 bits (66), Expect = 4.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 91 RNNKHGRTVIKFYRKSFYCSRCTRG 165
RN G T+ FY K FYC+ C G
Sbjct: 95 RNGSWGGTLDDFYVKGFYCAECRAG 119
>D79992-1|BAA11487.2| 2090|Homo sapiens KIAA0170 protein.
Length = 2090
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 290 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 403
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1645 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1682
>BX248307-2|CAM25929.1| 2089|Homo sapiens mediator of DNA damage
checkpoint 1 protein.
Length = 2089
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 290 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 403
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1644 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1681
>BC131491-1|AAI31492.1| 778|Homo sapiens MDC1 protein protein.
Length = 778
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 290 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 403
++ + TPKP +P +E F + TPE +GG++
Sbjct: 333 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 370
>BA000025-70|BAB63322.1| 2090|Homo sapiens KIAA0170 protein.
Length = 2090
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 290 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 403
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1645 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1682
>AL845353-22|CAI41891.1| 2089|Homo sapiens mediator of DNA damage
checkpoint 1 protein.
Length = 2089
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 290 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 403
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1644 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1681
>AL845353-21|CAI41890.1| 1244|Homo sapiens mediator of DNA damage
checkpoint 1 protein.
Length = 1244
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 290 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 403
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1034 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1071
>AL662848-3|CAI17440.1| 2089|Homo sapiens mediator of DNA damage
checkpoint 1 protein.
Length = 2089
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 290 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 403
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1644 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1681
>AL662797-7|CAI18195.1| 2089|Homo sapiens mediator of DNA damage
checkpoint 1 protein.
Length = 2089
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 290 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 403
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1644 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1681
>AB103605-1|BAF31266.1| 2089|Homo sapiens KIAA0170 protein protein.
Length = 2089
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 290 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 403
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1644 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1681
>AB088099-1|BAC54931.1| 2089|Homo sapiens homologue to Drosophila
photoreceptor protein calphotin protein.
Length = 2089
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 290 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 403
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1644 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1681
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,609,212
Number of Sequences: 237096
Number of extensions: 1881345
Number of successful extensions: 7144
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 7033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7141
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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