Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5673
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92838-10|CAB07412.2|  312|Caenorhabditis elegans Hypothetical p...    93   2e-19
Z92832-9|CAB07377.2|  312|Caenorhabditis elegans Hypothetical pr...    93   2e-19
U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical p...    60   1e-09

>Z92838-10|CAB07412.2|  312|Caenorhabditis elegans Hypothetical
           protein F31D4.1 protein.
          Length = 312

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 57/143 (39%), Positives = 86/143 (60%), Gaps = 7/143 (4%)
 Frame = +2

Query: 119 LSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLA-NTDILVGIKT 295
           LS  EK+F++ G + + R+DGRS  D+R + LE  V+S  +GS R++L   TD+L GIK 
Sbjct: 5   LSDDEKLFLITGAEANIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKL 64

Query: 296 EIDT--PKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFD-- 463
           E+++   + +K     I F VD SANA+ +F G+GG+  A  +S   Q AY  S+A D  
Sbjct: 65  ELESYDAETEKEPKQPINFNVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDIM 122

Query: 464 --LKQLCIVEGKQCWKLYVDILV 526
             L +  + +G + WK+ VDI V
Sbjct: 123 PNLAKTQLADGYR-WKINVDISV 144


>Z92832-9|CAB07377.2|  312|Caenorhabditis elegans Hypothetical
           protein F31D4.1 protein.
          Length = 312

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 57/143 (39%), Positives = 86/143 (60%), Gaps = 7/143 (4%)
 Frame = +2

Query: 119 LSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLA-NTDILVGIKT 295
           LS  EK+F++ G + + R+DGRS  D+R + LE  V+S  +GS R++L   TD+L GIK 
Sbjct: 5   LSDDEKLFLITGAEANIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKL 64

Query: 296 EIDT--PKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFD-- 463
           E+++   + +K     I F VD SANA+ +F G+GG+  A  +S   Q AY  S+A D  
Sbjct: 65  ELESYDAETEKEPKQPINFNVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDIM 122

Query: 464 --LKQLCIVEGKQCWKLYVDILV 526
             L +  + +G + WK+ VDI V
Sbjct: 123 PNLAKTQLADGYR-WKINVDISV 144


>U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical
           protein F37C12.13a protein.
          Length = 434

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
 Frame = +2

Query: 119 LSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTE 298
           +++ EK  I+  ++   R D RS  ++R ++L   VV    G+A   + NT ++  +  E
Sbjct: 6   VTNCEKAVILEALKIGKRFDFRSLEEFRDVKL---VVGAEVGTAICTIGNTKVMAAVSAE 62

Query: 299 IDTPKPDKPDMGKIEFFVDCS--ANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQ 472
           I  P   +P  G I   VD S  AN   E +  G + +   +   ++     S+  D++ 
Sbjct: 63  IAEPSSMRPHKGVINIDVDLSPMANYANEHDRLGSKGM--ELIRLLELIIRDSRCIDVEA 120

Query: 473 LCIVEGKQCWKLYVDILV 526
           LCI  GK+ WK+ VD+ +
Sbjct: 121 LCIRAGKEIWKIRVDVRI 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,752,589
Number of Sequences: 27780
Number of extensions: 309848
Number of successful extensions: 725
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)