Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5672
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce...    25   2.7  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   4.7  
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...    24   8.2  
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...    24   8.2  

>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 246 VNKNKIRQINVVVQRHSVRAYKSSTRFC 163
           V   K+ +I+ V+++  +   K STRFC
Sbjct: 86  VKATKLMKIDEVLEKAKIAKAKGSTRFC 113


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 276 NNNTRIAE*MVNKNKIRQINVVVQRHSVRAYKSS 175
           NN+ R AE  V  +KI    ++ +   VRA+K S
Sbjct: 175 NNHQRNAEKPVASDKITDAKLLARLERVRAWKES 208


>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 70  NWKGLRATSKLSI 108
           +WKGLR T KL+I
Sbjct: 52  DWKGLRVTVKLTI 64


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 70  NWKGLRATSKLSI 108
           +WKGLR T KL+I
Sbjct: 52  DWKGLRVTVKLTI 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,484,099
Number of Sequences: 5004
Number of extensions: 26482
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)