Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5672
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0525 + 34511025-34512168,34512710-34512886,34513131-34513447     27   3.4  
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906...    27   4.4  
06_01_0135 + 1039018-1041474                                           27   5.9  
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390...    27   5.9  

>03_06_0525 + 34511025-34512168,34512710-34512886,34513131-34513447
          Length = 545

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 260 IRVLLFLAQVYVEKRL*IYSRGGPVPNSPYSES 358
           +RV  FL   ++EKR  I+   GP  +S Y  S
Sbjct: 366 VRVPSFLISPWIEKRTVIHEPNGPQDSSQYEHS 398


>11_03_0026 -
           9057965-9058234,9059410-9059522,9059612-9059802,
           9060606-9060720,9061781-9061907,9062915-9062990,
           9064247-9064365,9065430-9065593,9065666-9065779,
           9065966-9066065,9066276-9066340,9068175-9068253,
           9069513-9069659,9069904-9070161,9070657-9070852,
           9071179-9071402,9072531-9072554
          Length = 793

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 278 LAQVYVEKRL*IYSRGGPVPNSPYSES 358
           LA +Y EK L +  +  P+P  PY E+
Sbjct: 722 LAAIYYEKALAVEVKDYPIPRLPYEEN 748


>06_01_0135 + 1039018-1041474
          Length = 818

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 147 FTLKYGKIELTICMLLHYAVEQQHLFAGFYFCSPFTLLFAYCY 275
           FT+  G  + T+C+LL         FA   F   F L   Y Y
Sbjct: 401 FTISSGIFDTTMCLLLTAHHSAAAFFATINFAVTFLLYIIYIY 443


>03_04_0167 +
           17936598-17936763,17938735-17938831,17938919-17939027,
           17939125-17939163,17939655-17939768,17939886-17939947,
           17940691-17940793,17942111-17942260,17942693-17942761,
           17942840-17942896,17942966-17943226,17946154-17946222,
           17946374-17946475,17947200-17947270,17947375-17947578,
           17947848-17947941,17948350-17948646
          Length = 687

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 256 RVNGEQK*NPANKCCCSTA*CKSIQIVNSILPYFSVK 146
           R+N E   NP  +  C  + CK + +   + P  S K
Sbjct: 373 RINPEINENPVGEMQCCDSSCKDVHVTTDVSPGISPK 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,979,898
Number of Sequences: 37544
Number of extensions: 175165
Number of successful extensions: 321
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)