Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5672
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical p...    27   3.9  
Z69718-5|CAA93539.1|  236|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z69716-8|CAA93530.1|  236|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily ass...    26   6.9  

>Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical
           protein F38B7.4 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +2

Query: 32  SWLSLCSPTCPGETGKAFGPPVNFQSXXXXXXXTHQLLFHTKIRQNRVD 178
           SWL   SP C G +G      VNF         T   +F     QN+ D
Sbjct: 176 SWLPDFSPQCSGNSGILLFMAVNFAIVSVINVATFAKIFKFYKNQNKTD 224


>Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 153 LKYGKIELTI-CMLLHYAVEQQHLFAGFYFCSPFT 254
           L  GKI+ +I CML  Y     H F  + + SPFT
Sbjct: 249 LTTGKIKRSIICMLAVYFTFLVHAFCFYVYISPFT 283


>Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 153 LKYGKIELTI-CMLLHYAVEQQHLFAGFYFCSPFT 254
           L  GKI+ +I CML  Y     H F  + + SPFT
Sbjct: 249 LTTGKIKRSIICMLAVYFTFLVHAFCFYVYISPFT 283


>Z69718-5|CAA93539.1|  236|Caenorhabditis elegans Hypothetical
           protein W06D11.1 protein.
          Length = 236

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 174 LTICMLLHYAVEQQHLFAGFY 236
           L  C L+H   E+QH+FA  Y
Sbjct: 150 LNNCHLMHLTAEKQHIFARVY 170


>Z69716-8|CAA93530.1|  236|Caenorhabditis elegans Hypothetical
           protein W06D11.1 protein.
          Length = 236

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 174 LTICMLLHYAVEQQHLFAGFY 236
           L  C L+H   E+QH+FA  Y
Sbjct: 150 LNNCHLMHLTAEKQHIFARVY 170


>U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 52 protein.
          Length = 665

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 282 RKYTWKNDYEFTRGGARYPIRPIVS 356
           R Y W +D EF     + PIR + S
Sbjct: 543 RDYVWTDDEEFVSDDKKIPIRRVAS 567


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,399,130
Number of Sequences: 27780
Number of extensions: 155988
Number of successful extensions: 359
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)