Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5670
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    34   0.017
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    27   1.9  
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    27   2.5  
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    26   4.4  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   7.7  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   7.7  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 21/66 (31%), Positives = 35/66 (53%)
 Frame = +2

Query: 161 DRKMTVAEKLKEDADLSQFLALLERNVVANTSLHYRQMTLFAPTNEAFQRYMGEMDDNLV 340
           D+  ++ + L   +  S+ +  L+RN +       + +TLFAP NEAF      ++ NL 
Sbjct: 27  DKSTSIIDLLSSKSQFSKLIRRLQRNRLVPYLNRNKGLTLFAPLNEAFPD--DSIEPNL- 83

Query: 341 LYHISN 358
           LY+I N
Sbjct: 84  LYYIVN 89


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 320 EMDDNLVLYHISNLATTLTNLDYAISSELDG-NPPLW-VTRRHDAMHDDIYVN 472
           E+D NL    I  LAT L  L YA   E+D  N  L  +  + D +  D+Y+N
Sbjct: 361 EIDGNLD--QIGALATRLKGLAYATGQEIDSQNARLGSIHDKSDRLDTDVYLN 411


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +2

Query: 269 QMTLFAPTNEAFQRYMGEMDDNLVLYHISNLATTLTNLDY-----AISSELDGNPPLWV 430
           Q T+ AP N A  +Y G+ D  L L   S+++ TL+  D      A  SE   N  LW+
Sbjct: 7   QCTVSAPVNIAVIKYWGKRDVALNLPTNSSISVTLSQDDLRTVTTASCSEKFENDTLWL 65


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = -1

Query: 311 IFGKLRLLARTGSSVCSEDWYWPLRSAPTAPRTERDLRLPSTFQRQSSSCQPQRVRRTSL 132
           +FG+    +RTG+S     + W   + PT P  E +  +PS+    SS   P      + 
Sbjct: 90  VFGQ-NAASRTGNSNTQPLFSWSTVNNPTKPVDETNATIPSSL-LLSSGISPNATVSNAQ 147

Query: 131 VTKYTAP*LQENIQ 90
                 P ++E +Q
Sbjct: 148 YGPAQPPSVEEQVQ 161


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 374 STWLPGLIYGRGRGYRPFHPCIFGKLRLLARTGSSVCSEDWYW 246
           +T   G+I   GR          G L+L A  G +V  + WYW
Sbjct: 713 ATLAQGIIDAGGRNVTIALQTATGSLKLSAIVGLTVFLQYWYW 755


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 165 LSATTSPTHITSNKIHGPIIARKHPNF 85
           LS T SPTH  +    G I+     NF
Sbjct: 223 LSQTNSPTHAANPSFPGTIVTHNTSNF 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,107
Number of Sequences: 5004
Number of extensions: 60204
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)