Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5670
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287...    29   2.6  
09_04_0068 - 14297861-14297919,14298368-14298423,14298454-142985...    28   6.0  

>01_01_0367 +
           2872650-2873045,2873800-2873940,2874255-2874364,
           2875279-2875390,2875959-2876030,2876605-2876696,
           2877116-2877236,2877712-2877834,2877935-2878130,
           2878221-2878408,2878553-2878624,2879336-2879434,
           2880027-2880107,2880337-2880405,2880730-2880787,
           2881181-2881347
          Length = 698

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -1

Query: 245 PLRSAPTAPRTERDLRLPSTFQRQSSSCQPQRVRRTSLVTKYTAP 111
           PL  +PTA    R L L +     S+SC P  +R  +     T P
Sbjct: 19  PLNPSPTASHLRRLLLLSTASSTSSASCSPSPLRTLAATDAATPP 63


>09_04_0068 -
           14297861-14297919,14298368-14298423,14298454-14298503,
           14298773-14298824,14299546-14299677,14300334-14300611
          Length = 208

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 407 LIPKK*HNP-SLSTWLPGLIYGRGRGYRPFHPCIFGKL 297
           LIP+  H+P SL  +L  + +G   G RP    ++GKL
Sbjct: 74  LIPRLSHSPRSLHEFLSQMRHGEAEGARPLAARVWGKL 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,918,960
Number of Sequences: 37544
Number of extensions: 394041
Number of successful extensions: 991
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)