Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5670
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032642-1|CAA21651.2|  461|Caenorhabditis elegans Hypothetical ...    31   0.77 
U00032-9|AAA50631.1|  229|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 rela...    29   4.1  
AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell fac...    29   4.1  
Z48795-3|CAA88727.1|  414|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AY389810-1|AAR28682.1|  781|Caenorhabditis elegans zinc finger t...    27   9.4  

>AL032642-1|CAA21651.2|  461|Caenorhabditis elegans Hypothetical
           protein Y48A6C.1 protein.
          Length = 461

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 241 YVPLQQRQELREICVFLQL--FSDSHLPVSHN 152
           Y PL++ +ELRE  +F ++  F D HL   H+
Sbjct: 2   YAPLKRAEELRECTIFREILKFRDDHLTADHH 33


>U00032-9|AAA50631.1|  229|Caenorhabditis elegans Hypothetical
           protein F37A4.3 protein.
          Length = 229

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 296 EAFQRYMGEMDDNLVLYHISNLATTLTNLDYAISSELDGNPPLWVTRRHDAMHDDI 463
           E   + + + D +L +Y I        N +Y I      N P +  RR +A+H D+
Sbjct: 121 ERLIKELSKFDSHLPIYTILRDFHADVNFNYCIIMRTQQNSPFFSNRRGNALHGDL 176


>U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 related
           protein 1 protein.
          Length = 782

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -1

Query: 317 PCIFGKLRLLARTGSSVCSEDWYWPLRSAPTAPRTERDLRLPSTFQRQSSSCQPQRVRRT 138
           P + G      + G     E    P++ A T+PR +  +  PS  + + S  +PQ    +
Sbjct: 400 PIVQGASGYFLQIGFGDAKEQSVSPIKRATTSPRKQPSIVPPSQKETEQSPKKPQGTAPS 459

Query: 137 SLVTK---YTAP 111
            + T+   YTAP
Sbjct: 460 IISTQGTTYTAP 471


>AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell factor
           1 protein.
          Length = 782

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -1

Query: 317 PCIFGKLRLLARTGSSVCSEDWYWPLRSAPTAPRTERDLRLPSTFQRQSSSCQPQRVRRT 138
           P + G      + G     E    P++ A T+PR +  +  PS  + + S  +PQ    +
Sbjct: 400 PIVQGASGYFLQIGFGDAKEQSVSPIKRATTSPRKQPSIVPPSQKETEQSPKKPQGTAPS 459

Query: 137 SLVTK---YTAP 111
            + T+   YTAP
Sbjct: 460 IISTQGTTYTAP 471


>Z48795-3|CAA88727.1|  414|Caenorhabditis elegans Hypothetical
           protein R05H5.4 protein.
          Length = 414

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 44  ELRIPHMYSASVL*KFGCFLAIMGPCILLLVMCVGLVVADRKMTVAEKLK 193
           E R+  +Y    + KF  F+    P +L+L  C G  V DR     EK+K
Sbjct: 167 EARVMQLYDHPNIVKFHGFILDDLPYLLVLEYCNGGAVEDRLRDKGEKIK 216


>Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical
           protein F21D9.5 protein.
          Length = 839

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 69  PRVCCENLDVFLQLW 113
           P  CC++++VFL+LW
Sbjct: 95  PNYCCKDINVFLKLW 109


>Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 306 KDTWVKWTITSSSTIYQTWQPR*QTWIMLFLR 401
           +D W +W +T +   + TW    QT I   LR
Sbjct: 806 QDGWARWDLTQNGPKFSTWDIEAQTTIPPTLR 837


>Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 306 KDTWVKWTITSSSTIYQTWQPR*QTWIMLFLR 401
           +D W +W +T +   + TW    QT I   LR
Sbjct: 818 QDGWARWDLTQNGPKFSTWDIEAQTTIPPTLR 849


>Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 306 KDTWVKWTITSSSTIYQTWQPR*QTWIMLFLR 401
           +D W +W +T +   + TW    QT I   LR
Sbjct: 806 QDGWARWDLTQNGPKFSTWDIEAQTTIPPTLR 837


>Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 306 KDTWVKWTITSSSTIYQTWQPR*QTWIMLFLR 401
           +D W +W +T +   + TW    QT I   LR
Sbjct: 818 QDGWARWDLTQNGPKFSTWDIEAQTTIPPTLR 849


>AY389810-1|AAR28682.1|  781|Caenorhabditis elegans zinc finger
           transcription factorSMA-9 protein.
          Length = 781

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
 Frame = +1

Query: 166 EDDCR*KV--EGRRRSLSVLGAVGAERS---GQYQSSLQTDDPVRANKRSFPKIHG 318
           +DDC  +V  E +++ +++L A  + +    GQ+Q   QT DP   N++S    HG
Sbjct: 514 DDDCIIEVVDEDQKQHIAMLTAAASGQDMEWGQFQKVTQTXDPAIVNQQSIVN-HG 568


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,138,608
Number of Sequences: 27780
Number of extensions: 341723
Number of successful extensions: 922
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)