Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5669
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 27 2.6
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 27 2.6
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 2.6
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 3.5
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 26 4.6
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 26 4.6
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 26 4.6
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 6.1
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 6.1
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 25 8.0
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 8.0
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 8.0
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 25 8.0
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +2
Query: 161 IRTYSSTKWRRFTRFCSQMILFNFSLFHENMIKIYL-FSILIR 286
++ YSST+ S+++L+ F+ F EN++K+ + SI +R
Sbjct: 422 VQLYSSTESDLLKEGLSRILLYFFTYFPENILKLKIDTSIFLR 464
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +2
Query: 569 HNYDNANSSKSDHHTDKNSSDEDSAPKSRSRNSHSKVKSDLWEENP 706
H+ D S K + ++S SAPK R + SK + NP
Sbjct: 205 HDLDEVISEKDTSLSRRSSRGRSSAPKRRKDSGSSKTTATYIPHNP 250
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 560 KTSHNYDNANSSKSDH-HTDKNSS-DEDSAPKSRSRNSHSKVKS 685
KT+ +D A + SD D NS DEDS +S+N+ S KS
Sbjct: 141 KTNPVHDKAVENNSDFIKFDWNSDEDEDSVSNDKSKNNESLKKS 184
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 560 KTSHNYDNANSSKSDHHTDKNSSDEDSAPKSRSRNSHSKVKSDL 691
+TS + +NA S+K +D+N ++ +AP S N K ++++
Sbjct: 147 ETSTSVENAESAKGS--SDENEANTATAPSSNEANGVDKKQNEI 188
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 569 HNYDNANSSKSDHHTDK--NSSDEDSAPKSRSRNSHSKVKSDLWEENPD 709
+ Y N K D + K +S+ S ++ SRN +KVK D E P+
Sbjct: 116 YKYLGGNRIKVDDSSPKLKQNSNNISKKQNSSRNDDTKVKKDTTIERPE 164
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 575 YDNANSSKSDHHTDKNSSDEDSAPKSRSRN 664
+D+ N ++ +HH D NSS P + N
Sbjct: 279 HDHENQTQLNHHLDNNSSISSHNPSLETAN 308
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 629 QNYFYQYDGQIL-MNSHYHSYVMFCYHHYDVNPLHQIF 519
Q+Y Y+ D QI+ + + YH Y+M HH P F
Sbjct: 848 QSYHYE-DCQIMDVRNDYHLYIMTWLHHSWTLPYRDYF 884
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 599 SDHHTDKNSSDEDSAPKSRSRNSHSKVKSDLWEEN 703
SD +D SD++S + + + ++ WEEN
Sbjct: 67 SDEESDYEGSDDESNFSKTASRTEDDIANEEWEEN 101
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +2
Query: 572 NYDNANSSKSDHHTDKNSSDEDSAPKSRSRNSHSKVKSDLWEEN 703
N +N N HT + + A +R H KSD W +N
Sbjct: 1436 NENNDNLRSVSRHTRR---EPQQAQNLNARREHESQKSDRWRQN 1476
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 587 NSSKSDHHTDKNSSDEDSAPKSRSRNSHSKVKSD 688
+SS++ HH SS AP + N HS KSD
Sbjct: 243 SSSQAPHH----SSSSGHAPSQQGGNKHSYKKSD 272
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 566 SHNYDNANSSKSDHHTDKNSSDEDSAPKSRSRNSHSKVKSDLWEENPD 709
S N+D N D ++SSD +SAP S H D W + D
Sbjct: 294 SSNFDLNNLGGDDDLRSESSSDFESAPASIL--EHEPTNWDDWVQEAD 339
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 560 KTSHNYDNANSSKSDHHTDKNSSDEDSAPKSRSRNSHSKVK 682
K +HN D +++++S TDK ++ K ++S +K +
Sbjct: 72 KKTHNEDESHTNESLPSTDKKKKKDNDDFKQNLKSSSNKTE 112
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 563 TSHNYDNANSSKSDHHTDKNSSDEDSAPKSRSRNSH 670
+S N++N +S S H D + D +APK+ S+ ++
Sbjct: 362 SSDNHNNTTTS-SQVHPDSRNPDPKAAPKAVSQKTN 396
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +2
Query: 599 SDHHTDKN---SSDEDSAPKSRSRNS-HSKVKSDLWEE 700
SDH + + SS +DS K S NS ++K + D W E
Sbjct: 128 SDHASKRKIARSSSDDSESKVESTNSFNAKKRKDAWTE 165
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,985
Number of Sequences: 5004
Number of extensions: 43764
Number of successful extensions: 166
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -