Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5669
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0021 + 19314211-19314311,19315202-19315307,19317135-193174...    29   2.7  
10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865...    28   8.4  

>11_06_0021 +
           19314211-19314311,19315202-19315307,19317135-19317412,
           19318587-19318692,19318812-19319159,19319237-19319313,
           19319392-19319516,19319884-19320135,19320314-19320336
          Length = 471

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 578 DNANSSKSDHHTDKNSSDEDSAPKSRSRNSHSKVK 682
           D+  S  +D H ++  SDED+ PK +       VK
Sbjct: 232 DSDTSEINDSHCERGDSDEDARPKKKKAEKGKAVK 266


>10_07_0124 -
           13085820-13085997,13086235-13086362,13086475-13086550,
           13086726-13086803,13086985-13087064,13087411-13087480,
           13087730-13087887,13088225-13088315,13088379-13088455,
           13088612-13088686,13088798-13089071,13089911-13090041,
           13090154-13090323,13090413-13090971,13091077-13091127
          Length = 731

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 629 QNYFYQYDGQILMNSHYHSYVMFCYHHYDVNPL 531
           +NYF+++DG I   S   +  + C  H+ V PL
Sbjct: 377 RNYFFKHDGTI--TSFISALKLACSKHFSVEPL 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,813,805
Number of Sequences: 37544
Number of extensions: 217311
Number of successful extensions: 596
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)