Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5669
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40954-4|AAB52655.3|  157|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z73896-8|CAA98061.1|  525|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z73422-12|CAJ76980.1|  525|Caenorhabditis elegans Hypothetical p...    27   9.9  
Z73422-11|CAA97768.1|  423|Caenorhabditis elegans Hypothetical p...    27   9.9  
Z73422-10|CAA97772.1|  525|Caenorhabditis elegans Hypothetical p...    27   9.9  

>U40954-4|AAB52655.3|  157|Caenorhabditis elegans Hypothetical
           protein ZK813.3 protein.
          Length = 157

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 590 SSKSDHHTDKNSSDEDSAPKSRSRNSHSKVKSD 688
           +S+S+  +  +SSD DS   SRSR+  S  +SD
Sbjct: 80  NSRSNSRSSSSSSDSDSDSDSRSRSRSSSSESD 112



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 569 HNYDNANSSKSDHHTDKNSSDEDSAPKSRSRNSHS 673
           H+ ++ ++S+S   +  + SD DS  +SRS +S S
Sbjct: 77  HHRNSRSNSRSSSSSSDSDSDSDSRSRSRSSSSES 111


>U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical
           protein C18C4.9 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 560 KTSHNYDNANSSKSDHHTDKNSSDEDSAPKSRSR-NSHSKVKSDLWEENP 706
           K++H     + SKS HH     +  D  P+S S  +SH +  SD    +P
Sbjct: 7   KSTHGTTRVSHSKSAHHNSSRVT-SDVIPRSASAISSHERFFSDSQSSSP 55


>Z73896-8|CAA98061.1|  525|Caenorhabditis elegans Hypothetical
           protein B0564.9 protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 650 TLVLNLHQNYFYQYDGQILMNSHYH 576
           TL+    +  +++  GQ LMNSH+H
Sbjct: 260 TLLKKCRKLRYFEISGQCLMNSHFH 284


>Z73422-12|CAJ76980.1|  525|Caenorhabditis elegans Hypothetical
           protein B0564.9 protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 650 TLVLNLHQNYFYQYDGQILMNSHYH 576
           TL+    +  +++  GQ LMNSH+H
Sbjct: 260 TLLKKCRKLRYFEISGQCLMNSHFH 284


>Z73422-11|CAA97768.1|  423|Caenorhabditis elegans Hypothetical
           protein B0564.6b protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 650 TLVLNLHQNYFYQYDGQILMNSHYH 576
           TL+    +  +++  GQ LMNSH+H
Sbjct: 158 TLLKKCRKLRYFEISGQCLMNSHFH 182


>Z73422-10|CAA97772.1|  525|Caenorhabditis elegans Hypothetical
           protein B0564.6a protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 650 TLVLNLHQNYFYQYDGQILMNSHYH 576
           TL+    +  +++  GQ LMNSH+H
Sbjct: 260 TLLKKCRKLRYFEISGQCLMNSHFH 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,121,490
Number of Sequences: 27780
Number of extensions: 238167
Number of successful extensions: 818
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)