Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5667
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.5  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   5.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 99   AVVVDSVLRRVLYEHGGGRVRLSSPYEYR 13
            A +V+S LR    ++  GRV   +P+E+R
Sbjct: 961  AFIVNSNLRLTFSKNVQGRVGFVTPFEHR 989


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 524 INNKLSKWCNIINSKE*RWA 583
           I NK++ W N++ + E  WA
Sbjct: 149 IANKINSWDNVVVAYEPVWA 168


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 339  NAASDPTAETTIVSDELVRSDGADNERARQTG 434
            NA  DPT E      E +R+D   N +   +G
Sbjct: 1336 NAVGDPTREWYKGQGEQIRTDSTRNIQILPSG 1367


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 339  NAASDPTAETTIVSDELVRSDGADNERARQTG 434
            NA  DPT E      E +R+D   N +   +G
Sbjct: 1332 NAVGDPTREWYKGQGEQIRTDSTRNIQILPSG 1363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.125    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,668
Number of Sequences: 438
Number of extensions: 3946
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)