Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5666
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    35   0.033
08_02_1461 - 27299891-27301870                                         31   0.40 
03_02_0804 + 11374219-11374221,11374326-11374473,11374556-113746...    28   2.9  
01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664           28   3.8  
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458...    27   5.0  
05_04_0423 - 21126038-21126556                                         27   6.6  
07_03_1609 + 28128275-28128380,28128941-28129128,28129238-281294...    27   8.7  
03_06_0720 + 35739383-35739391,35739802-35740275,35740695-357411...    27   8.7  

>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 34.7 bits (76), Expect = 0.033
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 42  AGTNFSNEIRTQQMFTIDLHGEGITSC-NKNETRKFIICVITGGRTSCESARVGTTTLPI 218
           +GT+   +    ++  +D  G GIT+C  +NE +KF   ++ G      + RV   T  +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 219 SAV 227
           +AV
Sbjct: 89  NAV 91


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 257 HPSNRNALLLHGRNRQGGGTHPRGLTRGPTTSNYANYKF 141
           H ++    LL GR R GGG H RGL   P  S     ++
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVSRMTGARY 320


>03_02_0804 +
           11374219-11374221,11374326-11374473,11374556-11374629,
           11374736-11375233,11375749-11376093,11376178-11376390,
           11376669-11377457,11377686-11377769
          Length = 717

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 209 PAYFCREAVKRFGLKGGAGVVTIRETLELISKVRG 313
           P  FC +    F  +GGAG V  R++ + ++K +G
Sbjct: 622 PEEFCGQNPSNFMKEGGAGTVEDRKSTKFVTKSQG 656


>01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664
          Length = 582

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = -1

Query: 272 LQRLPHPSNRNALLLHGRNRQGGGTHPRGLTRGPTTSNYANYKFAG 135
           LQ LP P   +    HG    GGG    G T+    S  ANY F G
Sbjct: 395 LQSLPDPMFHHQQHRHG----GGGGGGNGTTQQALFSGAANYSFGG 436


>01_03_0200 + 13744735-13745037,13745071-13745610,13745704-13745862,
            13748992-13749123,13749282-13749472,13749541-13749792,
            13750248-13750323,13750411-13750602,13750688-13750689,
            13753230-13753287,13753736-13754941
          Length = 1036

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = +2

Query: 254  GGAGVVTIRETLELISKVRGAFTLWMSMGSSNHLTSGGPVSSST 385
            GG   V    +LEL SKV  AFT ++++  S   TS GP+S+ST
Sbjct: 940  GGEDDVVKPASLEL-SKV--AFTGFLTVAISARTTSRGPLSTST 980


>05_04_0423 - 21126038-21126556
          Length = 172

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 354 KWLLEPIDIHNVNAPRTFDISSK 286
           +W   P DI+ +N+  +FD+S+K
Sbjct: 120 RWEQPPADIYKMNSDASFDVSTK 142


>07_03_1609 +
           28128275-28128380,28128941-28129128,28129238-28129415,
           28130753-28130973
          Length = 230

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 272 LQRLPHPSNRNALLLHGRNRQGGGTHPRGLTRGPTTS-NYANY 147
           + R P PS R+A+L    NR   G HP+ + R      N+  Y
Sbjct: 7   MARGPQPSPRHAILAQLDNRAMLGLHPQHVLRSHAQEVNFVRY 49


>03_06_0720 +
           35739383-35739391,35739802-35740275,35740695-35741122,
           35741273-35741351
          Length = 329

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 227 HGRNRQGGGTHPRGLTRGPTTSNY 156
           HG+ R+GG   PRG T     S Y
Sbjct: 18  HGQQRRGGSPPPRGRTTSVYRSGY 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,705,174
Number of Sequences: 37544
Number of extensions: 310842
Number of successful extensions: 783
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)