Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5666
(437 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69361-3|CAA93289.1| 533|Caenorhabditis elegans Hypothetical pr... 31 0.37
Z68882-20|CAA93112.1| 533|Caenorhabditis elegans Hypothetical p... 31 0.37
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 30 0.64
U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical pr... 29 1.1
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 27 4.5
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 27 4.5
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 27 4.5
L16685-3|AAA28169.3| 321|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 27 7.9
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 27 7.9
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 27 7.9
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 27 7.9
AF039051-4|AAB94264.1| 539|Caenorhabditis elegans Hypothetical ... 27 7.9
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 27 7.9
>Z69361-3|CAA93289.1| 533|Caenorhabditis elegans Hypothetical
protein T13H10.1 protein.
Length = 533
Score = 31.1 bits (67), Expect = 0.37
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -3
Query: 402 LIA*KGVDELTGPPDVKWLLEPIDIHNVNAPRTFDISSKVSRIVTTPAPPFKPKR 238
L+ +G D+ G L + I + N+ P+ +S+ + + APPF+P+R
Sbjct: 376 LLTLEGFDQAPGSNSYFELPDHIPMENIEQPKKIQVSNILPYMSKPVAPPFEPER 430
>Z68882-20|CAA93112.1| 533|Caenorhabditis elegans Hypothetical
protein T13H10.1 protein.
Length = 533
Score = 31.1 bits (67), Expect = 0.37
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -3
Query: 402 LIA*KGVDELTGPPDVKWLLEPIDIHNVNAPRTFDISSKVSRIVTTPAPPFKPKR 238
L+ +G D+ G L + I + N+ P+ +S+ + + APPF+P+R
Sbjct: 376 LLTLEGFDQAPGSNSYFELPDHIPMENIEQPKKIQVSNILPYMSKPVAPPFEPER 430
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 30.3 bits (65), Expect = 0.64
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 3 AFVLSDAPVFESQAGTNFSNEIRTQQMFTIDLHGEGITSCNKNETRKFII-CVITGGRTS 179
A VL D +FE+Q NF + + TI+L C+KN + F++ IT GR +
Sbjct: 2037 AMVLRDC-LFENQNVQNFKDAAEAKYYGTINLDYASREHCDKNILKWFVVFSSITSGRGN 2095
Query: 180 CESARVG 200
G
Sbjct: 2096 AGQTNYG 2102
>U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical
protein C10G11.6 protein.
Length = 425
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 366 PPDVKWLLEPIDIHNVNAPRTFDISSKVSRIVTTPAPP 253
PP V ++ P I++ T ++SK+S+ + TP PP
Sbjct: 195 PPSVYFISTP-SIYSTAKSSTSTVTSKLSKAIITPTPP 231
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 227 EAVKRFGLKGGAGVVTIRETLELISKVRG 313
E +KR GGAG + + LE + K+RG
Sbjct: 402 ETIKRMNGTGGAGSASSADLLEELRKIRG 430
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 227 EAVKRFGLKGGAGVVTIRETLELISKVRG 313
E +KR GGAG + + LE + K+RG
Sbjct: 475 ETIKRMNGTGGAGSASSADLLEELRKIRG 503
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 227 EAVKRFGLKGGAGVVTIRETLELISKVRG 313
E +KR GGAG + + LE + K+RG
Sbjct: 475 ETIKRMNGTGGAGSASSADLLEELRKIRG 503
>L16685-3|AAA28169.3| 321|Caenorhabditis elegans Hypothetical
protein ZC21.3 protein.
Length = 321
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 260 PHPSNRNALLLHGRNRQGGGTHPRGLTRGPTTSNYAN 150
P SN+N +L N QG + +G+ TT Y N
Sbjct: 164 PQSSNQNQVLRDQSNNQGYMNNNQGMYNTQTTQGYGN 200
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 318 NAPRTFDISSKVSRIVTTPAPPFKPKRFTA 229
N PRT SSK + TT P P+R T+
Sbjct: 168 NTPRTTSSSSKTTINTTTTRIPSTPRRITS 197
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 354 KWLLEPIDIHNVNAPRTFDISSKVSRIVTTPAPPFKPKRFTASRQK 217
K L E +D N AP + S + + PAPP PK+ R+K
Sbjct: 182 KALYEKMDGMNGIAPESASTSGQT--FMQDPAPPLPPKKAAPKRKK 225
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +2
Query: 239 RFGLKGGAGV---VTIRETLELISKVRGAFTLWMSMG 340
+ GL GGAGV V I E + ++K G ++++ +G
Sbjct: 210 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 246
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 318 NAPRTFDISSKVSRIVTTPAPPFKPKRFTA 229
N PRT SSK + TT P P+R T+
Sbjct: 168 NTPRTTSSSSKTTINTTTTRIPSTPRRITS 197
>AF039051-4|AAB94264.1| 539|Caenorhabditis elegans Hypothetical
protein C14C6.6 protein.
Length = 539
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 185 LTRGPTTSNYANYKFAGFIFITRCYSFTVEINREHLLSTY 66
L T + Y N K IFI + Y V++ RE L + Y
Sbjct: 363 LKHNNTPATYKNEKQVIAIFIVKIYMKLVQLTREMLFNKY 402
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = -3
Query: 327 HNVNAP-----RTFDISSKVSRIVTTPAPPFKPKRFTASRQ 220
HN N+P + F+ S V TP PP PK + +S +
Sbjct: 1453 HNSNSPTLSSEQPFEDPMSPSIFVNTPPPPLPPKTYRSSNK 1493
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,834,846
Number of Sequences: 27780
Number of extensions: 238433
Number of successful extensions: 581
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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