Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5665
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0019 + 403078-404211 31 0.70
01_01_0356 - 2814175-2815401 30 1.2
04_01_0146 + 1701744-1701860,1702036-1702112,1702247-1702344,170... 30 1.6
04_04_0806 - 28186486-28186701,28187047-28187341,28189800-281899... 29 2.8
05_05_0103 - 22408832-22410041,22410500-22410628,22411600-224117... 29 3.7
12_02_0711 + 22404710-22404824,22405726-22406288,22406386-224065... 28 5.0
01_06_0964 + 33446750-33447868 28 6.5
10_08_0291 + 16556823-16557167,16557255-16557497,16557568-16558131 27 8.7
08_01_0376 - 3320621-3321151 27 8.7
07_03_0553 - 19390886-19391452,19391596-19391709,19391827-19391883 27 8.7
05_06_0250 - 26682207-26683811 27 8.7
02_01_0713 - 5332145-5332351,5332675-5332893,5334347-5334559,533... 27 8.7
01_07_0380 + 43181564-43181639,43182053-43182218,43182494-431826... 27 8.7
>09_01_0019 + 403078-404211
Length = 377
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -1
Query: 253 HPTPASCAFLIATSIQKFPTVAPKASQPSTRAVAADSFNITGFAQGSVAFDRIS 92
H P+S A + AP AS PS+ + AA S N QG +A RI+
Sbjct: 44 HQPPSSSVSANAAAANAAAASAPSASAPSSSSAAASSDNAYTSFQGLLALARIT 97
>01_01_0356 - 2814175-2815401
Length = 408
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +3
Query: 273 NHYGMAGYWALKAEKQGLIGLSFT-NSSPILVPTRSKTSALGTNPIALAAPAKNGDNLVV 449
N Y AG WA AE L+ S S+P V R L T+ +A A L V
Sbjct: 189 NSYSAAGGWAAPAEFLDLLRFSLAGRSTPSAVVHRGAAHWLCTDDVASATRGDRLYKLSV 248
Query: 450 DLATTAVAMGKVEI 491
++ A A +V +
Sbjct: 249 EVGVPAAATPRVSM 262
>04_01_0146 +
1701744-1701860,1702036-1702112,1702247-1702344,
1704073-1704228,1704671-1705290,1705397-1705458,
1705551-1705941,1706404-1706575,1706686-1707212
Length = 739
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +3
Query: 396 TNPIALAAPAKNGDNLVVDLATTAVAMGKVEIQVHKEEPLPAGW 527
T P L AK GD +++ + T + H P+P+ W
Sbjct: 127 TKPTGLLHDAKYGDGIIIGIIDTGIWPESASFSDHGLSPIPSKW 170
>04_04_0806 -
28186486-28186701,28187047-28187341,28189800-28189942,
28190041-28190095,28190181-28190223,28190411-28190486,
28190708-28190826,28190917-28191487
Length = 505
Score = 29.1 bits (62), Expect = 2.8
Identities = 28/78 (35%), Positives = 37/78 (47%)
Frame = +3
Query: 309 AEKQGLIGLSFTNSSPILVPTRSKTSALGTNPIALAAPAKNGDNLVVDLATTAVAMGKVE 488
A + G GLS SP+L P R+ SA+GT+ A P K ++ L A G
Sbjct: 40 AVEVGRFGLSHP-PSPLL-PHRAHASAIGTDEAEDANPGKEAAVYLL-LLEGADVRGIAR 96
Query: 489 IQVHKEEPLPAGWALGPD 542
+ EE PAG A+G D
Sbjct: 97 LP-SLEEGRPAGGAVGDD 113
>05_05_0103 -
22408832-22410041,22410500-22410628,22411600-22411703,
22411780-22411874,22412483-22412540,22412741-22412792,
22415399-22415532
Length = 593
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 537 PDGKTTTDAKLAFETAKLLPLG 602
P GK TTD+ +F+TA LL LG
Sbjct: 476 PIGKCTTDSPQSFKTAALLSLG 497
>12_02_0711 +
22404710-22404824,22405726-22406288,22406386-22406547,
22406664-22407257
Length = 477
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 176 RRFRCYCRKLLYGCRDKEGAGSGSRMGGCQT*QSLRYGWILGIESGK 316
R R CR+L +GC D GA + S +G T ++ G I GI GK
Sbjct: 48 RLLRPRCRRLYHGCSD--GAAACSVVGERVTVLTIDGGGIRGIIPGK 92
>01_06_0964 + 33446750-33447868
Length = 372
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -1
Query: 259 ATHPTPASCAFLIATSIQKFPTVAPKASQPSTRAVAADSFNITGFAQGSVA 107
A+ P PASC ++A ++ P P RA+ A S + A +VA
Sbjct: 54 ASSPDPASCQAIVADAVLASPHSHPSRPAHVLRAILATSLDRHDAAAEAVA 104
>10_08_0291 + 16556823-16557167,16557255-16557497,16557568-16558131
Length = 383
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = -1
Query: 427 LAGAAKAMGFVPNALVLDLVGTNIGEEFVNDSPMRPCFSAFNAQYPAIP 281
L GAA+A V ALVL +G G +FVN+ + P FS + Q+ A+P
Sbjct: 138 LVGAARARRIVNGALVLITLG---GNDFVNNYYLVP-FSLRSQQF-ALP 181
>08_01_0376 - 3320621-3321151
Length = 176
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Frame = -1
Query: 319 CFSAFNAQYPAIPXXXXXLAATHPTPASCAFLIATSIQKF-PTVAPKASQPSTRAVAADS 143
C SA P +P A P PAS A L A + F P P A + AV
Sbjct: 33 CLSALGLAAPPLPDEHPAYAPPPPPPASMAALPADLVWAFQPAPEPAAIKARLPAVRYAD 92
Query: 142 F 140
F
Sbjct: 93 F 93
>07_03_0553 - 19390886-19391452,19391596-19391709,19391827-19391883
Length = 245
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -1
Query: 262 AATHPTPASCAFLIATSIQKFPTVAPKASQPSTRAV 155
A +P +S A IAT+ + P+ P A+QP TR++
Sbjct: 83 ADINPGTSSPAIHIATTQLESPSSGPPAAQPQTRSL 118
>05_06_0250 - 26682207-26683811
Length = 534
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 63 GLNRLEFYINDILSKATDPCAKPVILKESAATALVDGCDA 182
GL+ L+F ++D+L C ++L AT +D DA
Sbjct: 82 GLDALDFLVSDVLPPRYHRCRDHLLLHHPHATKGIDADDA 121
>02_01_0713 -
5332145-5332351,5332675-5332893,5334347-5334559,
5334637-5334730,5334860-5335020,5335114-5335315,
5335619-5335784,5336208-5336286
Length = 446
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 57 SHGLNRLEFYINDILSKATDPCAKPVILKESAATALVDGCDALGAT 194
SH +++ YIN I+ + C K +LK A AL D + T
Sbjct: 126 SHDFSKVLDYINKIVLVFSPDCLKAKLLKAKALLALKDYSTVISET 171
>01_07_0380 +
43181564-43181639,43182053-43182218,43182494-43182695,
43182789-43182949,43183079-43183172,43183250-43183462,
43184917-43185135,43185458-43185661
Length = 444
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 57 SHGLNRLEFYINDILSKATDPCAKPVILKESAATALVDGCDALGAT 194
SH +++ YIN I+ + C K +LK A AL D + T
Sbjct: 125 SHDFSKVLEYINKIVLVFSPNCLKAKLLKAKALLALEDYSSVISET 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,614,623
Number of Sequences: 37544
Number of extensions: 348984
Number of successful extensions: 1153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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