Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5665
(604 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49127-10|CAA88951.1| 400|Caenorhabditis elegans Hypothetical p... 231 4e-61
AL033535-3|CAA22133.1| 400|Caenorhabditis elegans Hypothetical ... 231 4e-61
Z96047-9|CAB09417.1| 372|Caenorhabditis elegans Hypothetical pr... 195 2e-50
Z81077-16|CAB03073.1| 372|Caenorhabditis elegans Hypothetical p... 195 2e-50
U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical pr... 31 0.84
>Z49127-10|CAA88951.1| 400|Caenorhabditis elegans Hypothetical
protein VF13D12L.3 protein.
Length = 400
Score = 231 bits (564), Expect = 4e-61
Identities = 106/193 (54%), Positives = 135/193 (69%)
Frame = +3
Query: 24 LLIHADTVGHYSHGLNRLEFYINDILSKATDPCAKPVILKESAATALVDGCDALGATVGN 203
+L+ D GHYSHGLNRL+ Y+ DI +P+ILKE A TA VDG + LG VGN
Sbjct: 78 VLLEGDIRGHYSHGLNRLDMYVRDIEQNVCKGDGEPIILKEKAGTAWVDGNNLLGPVVGN 137
Query: 204 FCMDVAIRKAQEAGVGWVAARRSNHYGMAGYWALKAEKQGLIGLSFTNSSPILVPTRSKT 383
FCMD+AI KA+ AG+GWV A+ SNHYG+AG++AL+A K+G++G+S TN+SPI PTRS
Sbjct: 138 FCMDLAIEKAKNAGIGWVVAKGSNHYGIAGWYALRAMKKGMLGMSMTNTSPISFPTRSAV 197
Query: 384 SALGTNPIALAAPAKNGDNLVVDLATTAVAMGKVEIQVHKEEPLPAGWALGPDGKTTTDA 563
ALGTNPI+LAAP D+ V+D+A+T VA+GKVE+ KE P+P W +G GK TTD
Sbjct: 198 PALGTNPISLAAPGTGDDSFVLDMASTTVAIGKVELAARKENPVPLSWGVGEGGKETTDP 257
Query: 564 KLAFETAKLLPLG 602
LLPLG
Sbjct: 258 TKVLYGGGLLPLG 270
>AL033535-3|CAA22133.1| 400|Caenorhabditis elegans Hypothetical
protein VF13D12L.3 protein.
Length = 400
Score = 231 bits (564), Expect = 4e-61
Identities = 106/193 (54%), Positives = 135/193 (69%)
Frame = +3
Query: 24 LLIHADTVGHYSHGLNRLEFYINDILSKATDPCAKPVILKESAATALVDGCDALGATVGN 203
+L+ D GHYSHGLNRL+ Y+ DI +P+ILKE A TA VDG + LG VGN
Sbjct: 78 VLLEGDIRGHYSHGLNRLDMYVRDIEQNVCKGDGEPIILKEKAGTAWVDGNNLLGPVVGN 137
Query: 204 FCMDVAIRKAQEAGVGWVAARRSNHYGMAGYWALKAEKQGLIGLSFTNSSPILVPTRSKT 383
FCMD+AI KA+ AG+GWV A+ SNHYG+AG++AL+A K+G++G+S TN+SPI PTRS
Sbjct: 138 FCMDLAIEKAKNAGIGWVVAKGSNHYGIAGWYALRAMKKGMLGMSMTNTSPISFPTRSAV 197
Query: 384 SALGTNPIALAAPAKNGDNLVVDLATTAVAMGKVEIQVHKEEPLPAGWALGPDGKTTTDA 563
ALGTNPI+LAAP D+ V+D+A+T VA+GKVE+ KE P+P W +G GK TTD
Sbjct: 198 PALGTNPISLAAPGTGDDSFVLDMASTTVAIGKVELAARKENPVPLSWGVGEGGKETTDP 257
Query: 564 KLAFETAKLLPLG 602
LLPLG
Sbjct: 258 TKVLYGGGLLPLG 270
>Z96047-9|CAB09417.1| 372|Caenorhabditis elegans Hypothetical
protein F36A2.3 protein.
Length = 372
Score = 195 bits (476), Expect = 2e-50
Identities = 89/196 (45%), Positives = 129/196 (65%), Gaps = 1/196 (0%)
Frame = +3
Query: 18 ADLLIHADTVGHYSHGLNRLEFYINDILSKATDPCAKPVILKESAATALVDGCDALGATV 197
A+ L+ +D GHYSHG+NRL Y++D++ K+T P +LK +TA VDG + LG V
Sbjct: 44 AETLLCSDYRGHYSHGINRLHIYVHDLMMKSTAVTGTPQVLKSKGSTAWVDGNNLLGPVV 103
Query: 198 GNFCMDVAIRKAQEAGVGWVAARRSNHYGMAGYWALKAEKQGLIGLSFTNSSPILVPTRS 377
GNFCM +A+ KA+E G+GWV R SNH+G+AG++A A + GL+G++FTN+SP + PT S
Sbjct: 104 GNFCMQLAVEKAKEFGIGWVVCRNSNHFGIAGWYADFACRNGLVGMAFTNTSPCVFPTGS 163
Query: 378 KTSALGTNPIALAAPAKNGDNLVVDLATTAVAMGKVEIQVHKEEP-LPAGWALGPDGKTT 554
+ +LG+NPI +AAP GD+ +D+A+T VA GK+E+ K E +P W +G T
Sbjct: 164 REKSLGSNPICMAAPGMEGDSFFLDMASTTVAYGKIEVVDRKGETYIPGSWGADKNGDET 223
Query: 555 TDAKLAFETAKLLPLG 602
+ K + L PLG
Sbjct: 224 HNPKEVLDGGGLQPLG 239
>Z81077-16|CAB03073.1| 372|Caenorhabditis elegans Hypothetical
protein F36A2.3 protein.
Length = 372
Score = 195 bits (476), Expect = 2e-50
Identities = 89/196 (45%), Positives = 129/196 (65%), Gaps = 1/196 (0%)
Frame = +3
Query: 18 ADLLIHADTVGHYSHGLNRLEFYINDILSKATDPCAKPVILKESAATALVDGCDALGATV 197
A+ L+ +D GHYSHG+NRL Y++D++ K+T P +LK +TA VDG + LG V
Sbjct: 44 AETLLCSDYRGHYSHGINRLHIYVHDLMMKSTAVTGTPQVLKSKGSTAWVDGNNLLGPVV 103
Query: 198 GNFCMDVAIRKAQEAGVGWVAARRSNHYGMAGYWALKAEKQGLIGLSFTNSSPILVPTRS 377
GNFCM +A+ KA+E G+GWV R SNH+G+AG++A A + GL+G++FTN+SP + PT S
Sbjct: 104 GNFCMQLAVEKAKEFGIGWVVCRNSNHFGIAGWYADFACRNGLVGMAFTNTSPCVFPTGS 163
Query: 378 KTSALGTNPIALAAPAKNGDNLVVDLATTAVAMGKVEIQVHKEEP-LPAGWALGPDGKTT 554
+ +LG+NPI +AAP GD+ +D+A+T VA GK+E+ K E +P W +G T
Sbjct: 164 REKSLGSNPICMAAPGMEGDSFFLDMASTTVAYGKIEVVDRKGETYIPGSWGADKNGDET 223
Query: 555 TDAKLAFETAKLLPLG 602
+ K + L PLG
Sbjct: 224 HNPKEVLDGGGLQPLG 239
>U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical
protein F10D7.5a protein.
Length = 617
Score = 30.7 bits (66), Expect = 0.84
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = -1
Query: 394 PNALVLDLVGTNIGEEFVNDSPMRPCFSAFNAQYPAIPXXXXXLAATHPTPASCAFLIAT 215
P L+LD+ G ++G E ++ S RP NA P I A +PA A +
Sbjct: 174 PMWLILDIYGNSVGVEIIDASEFRP---RRNAPPPPIIAVPPRPAPARTSPAITAIALTP 230
Query: 214 SIQKFPTVAPKASQPSTR 161
S ++A + R
Sbjct: 231 SSASESSMASRTDDSGKR 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,560,631
Number of Sequences: 27780
Number of extensions: 273957
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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