Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5661
(302 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 34 0.005
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 34 0.005
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 0.46
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 26 1.4
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 24 4.3
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 24 4.3
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ... 24 4.3
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 24 5.6
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc... 23 7.5
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 23 9.9
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 23 9.9
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 33.9 bits (74), Expect = 0.005
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 23 IVLMTSITKFAPRCCVCELPIMPKKGQEETVTVVALDRSFHVKCYR 160
+VL S P CC+C +P++P + + V S+H KC R
Sbjct: 179 LVLCGSSESGPPECCICLMPVLPC----QALFVAPCSHSYHYKCIR 220
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 33.9 bits (74), Expect = 0.005
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +2
Query: 119 VVALDRSFHVKCYRCEDCGLLLSS*AEGRGCYPLDDHI------LCKTCNARRVRLL 271
V AL +H++C+RC DC L++S +P+DD LC+T RR+ LL
Sbjct: 128 VRALGNIYHLECFRCHDCNSLVAS-----KFFPIDDPTLNKQVPLCETDYFRRLDLL 179
Score = 26.6 bits (56), Expect = 0.80
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 44 TKFAPRCCVCELPIMPKKGQEETVTVVALDRSFHVKCY 157
T FA RCC C+ PI+ Q V + +++HV C+
Sbjct: 234 TLFAARCCGCDGPIL---RQFVEVYRNGVSQNWHVPCH 268
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.5 bits (58), Expect = 0.46
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 155 YRCEDCGLLLSS*AEGRGCYPLDDHILCKTC 247
Y C+DCG+ GRG DD+ CKTC
Sbjct: 224 YHCDDCGIC----RIGRGLG--DDYFHCKTC 248
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 1.4
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 137 SFHVKCYRCEDC 172
S+H +C+RC DC
Sbjct: 96 SYHRECFRCHDC 107
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 24.2 bits (50), Expect = 4.3
Identities = 10/45 (22%), Positives = 20/45 (44%)
Frame = +2
Query: 50 FAPRCCVCELPIMPKKGQEETVTVVALDRSFHVKCYRCEDCGLLL 184
F R C+C+ P+ + + + FH KC + + G+ +
Sbjct: 118 FEGRFCICDTVYNPETEEGTMFQCILCEDWFHEKCLQKTNKGIAI 162
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 24.2 bits (50), Expect = 4.3
Identities = 6/22 (27%), Positives = 16/22 (72%)
Frame = -2
Query: 262 NATCIASFAKYMIVKWITTSTF 197
+ +CI+ + + +++W+ T+TF
Sbjct: 389 STSCISDYGETFLLEWMKTNTF 410
>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 437
Score = 24.2 bits (50), Expect = 4.3
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +2
Query: 86 MPKKGQEETVTVVALDRSFHVKCYRCEDCGLLL 184
MP + V + RS H++C C D L +
Sbjct: 1 MPPQKYHCNVCAQDITRSIHIRCVECVDFDLCI 33
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 23.8 bits (49), Expect = 5.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -2
Query: 124 NDCHSFLLTFFWHNW*FTY 68
ND H +++T+ H+W Y
Sbjct: 862 NDYHLYIMTWLHHSWTLPY 880
>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 23.4 bits (48), Expect = 7.5
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 44 TKFAPRCCVCELPIMPKKGQEETVTVVALDRSFHVKCYRCEDC 172
T +PRC VC + + K QE+ V + ++ C C
Sbjct: 227 TPQSPRCSVCPISEICKAYQEQNVIRDGNTIKYDIEDVPCNIC 269
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 23.0 bits (47), Expect = 9.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 92 KKGQEETVTVVALDRSFHVKCYRCEDCGL 178
+K T++ V + FH K Y+ + CGL
Sbjct: 312 EKFLSNTLSAVQNLKDFHYKRYKLDICGL 340
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 23.0 bits (47), Expect = 9.9
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -2
Query: 160 PVTLNMETTVQGNDCHSFLLTF 95
P ++ + ++ DCH L+TF
Sbjct: 211 PTSIYFDCSISVRDCHDSLVTF 232
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,202,778
Number of Sequences: 5004
Number of extensions: 20722
Number of successful extensions: 64
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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