Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5661
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696... 27 3.7
11_01_0404 + 3071412-3071464,3073572-3074970 26 4.9
01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452... 26 4.9
10_08_1027 - 22404169-22404807,22406148-22406360,22407062-224072... 26 6.5
08_02_1056 + 23991894-23992028,23992139-23992258,23993366-239934... 26 6.5
05_04_0339 + 20397591-20397627,20398494-20398526,20399210-203994... 26 6.5
10_06_0139 - 11139004-11139031,11139300-11141017,11141408-111414... 25 8.6
08_02_0715 - 20352613-20352852,20352926-20352982,20354208-203543... 25 8.6
06_03_0046 - 15852653-15854560 25 8.6
06_01_0302 + 2188905-2188989,2189309-2189406,2189487-2189753,218... 25 8.6
03_02_0044 - 5245204-5245538,5245946-5246093,5246182-5247395,524... 25 8.6
02_05_0358 + 28264928-28266049 25 8.6
>03_02_0952 +
12666750-12666777,12666965-12667185,12669464-12669649,
12670147-12670212,12670335-12670427,12670528-12670659,
12670794-12670895,12670993-12671070,12671148-12671219,
12672185-12672292,12672368-12672465,12672904-12672964,
12673058-12673120,12673228-12673284,12673571-12673729,
12674310-12674441,12674516-12674602,12674667-12674738,
12675899-12675985,12676052-12676427,12676727-12676788,
12676946-12677014,12677096-12677142,12677189-12677342,
12677874-12677999
Length = 911
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 127 GNDCHSFLLTFFWHNW*FTYTATWSKFSYGSHQ 29
G+ HSF F+ +W + TW F Y S +
Sbjct: 101 GSSAHSFPTGNFFKSWSTSVDPTWRVFCYSSSE 133
>11_01_0404 + 3071412-3071464,3073572-3074970
Length = 483
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 83 IMPKKGQEETVTVVALDRSFHVKCYRCED 169
+M KKG+ + ++ V +R HV +CED
Sbjct: 195 MMQKKGKWKAISKVMGERGCHVSPQQCED 223
>01_06_1613 +
38643833-38643974,38644054-38644190,38644828-38645207,
38645487-38645583,38645685-38645972,38646683-38647648
Length = 669
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 95 KGQEETVTVVALDRSFHVKCYRCEDC 172
KGQEET ++ L+ + + R DC
Sbjct: 111 KGQEETSAILQLESQIYYRLGRMNDC 136
>10_08_1027 -
22404169-22404807,22406148-22406360,22407062-22407255,
22407422-22407566,22407801-22407875,22408222-22408380,
22408466-22408645,22408756-22409243,22409375-22409738,
22409811-22409943,22410023-22410153,22410247-22410354,
22410451-22410897,22411425-22411514,22411607-22411915,
22412209-22412320,22412488-22412699
Length = 1332
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 272 SKDERDVHCKFCKVYDRQVDNNLDLLLMNSTVSRNLHT 159
S D R++H K K + + NN+D LL + ++H+
Sbjct: 358 SADRRELHVKRTKKWLEETANNVDKLLSATFPHLSIHS 395
>08_02_1056 +
23991894-23992028,23992139-23992258,23993366-23993434,
23993568-23993648
Length = 134
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 74 ELPIMPKKGQEETVTVVALDRSFHVKCYRCEDC 172
E+ + G+EE V + + S + KCY C C
Sbjct: 49 EVAVAVVAGEEEKVRLGSSPPSCYSKCYGCSPC 81
>05_04_0339 +
20397591-20397627,20398494-20398526,20399210-20399438,
20402055-20402184,20402251-20402532
Length = 236
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 134 RSFHVKCYRCEDCG 175
R+ H+K Y+C DCG
Sbjct: 217 RAEHIKHYKCPDCG 230
>10_06_0139 -
11139004-11139031,11139300-11141017,11141408-11141477,
11142520-11143361
Length = 885
Score = 25.4 bits (53), Expect = 8.6
Identities = 7/22 (31%), Positives = 15/22 (68%)
Frame = -1
Query: 260 RDVHCKFCKVYDRQVDNNLDLL 195
RD+H FC + + ++ N+++L
Sbjct: 571 RDIHLTFCALPSKHLERNMEIL 592
>08_02_0715 -
20352613-20352852,20352926-20352982,20354208-20354339,
20354754-20354828,20355779-20355943,20356031-20356263,
20356484-20356574,20356789-20357223,20357911-20357976,
20358688-20358807,20358915-20359121
Length = 606
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 254 VHCKFCKVYDRQVDNNLDLLLMNSTVSRNLH 162
VHCK V D + L L + + +NLH
Sbjct: 293 VHCKISGVSDHFAQDELHGLTLGRNIVKNLH 323
>06_03_0046 - 15852653-15854560
Length = 635
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 101 QEETVTVVALDRSFHVKCYRCEDCGLLLSS*AEGRGCYP-LDDHILCKTCNAR 256
+E+ ++ L+ +F + C RC D G + S +E C+ L+ + + C R
Sbjct: 212 EEDPISARNLNSNFMLSCTRCLDKGHIASDCSEPVWCHSCLEAGHMARFCATR 264
>06_01_0302 +
2188905-2188989,2189309-2189406,2189487-2189753,
2189906-2189947,2190071-2190078,2190230-2190273,
2190615-2190695,2190779-2190907,2191017-2191114,
2191188-2191448,2191537-2191581,2191748-2191881,
2191965-2192045,2192127-2192308,2192632-2192746,
2192873-2193056,2193144-2193329
Length = 679
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -1
Query: 272 SKDERDVHCKFCKVYD 225
S+D+RD+HCK K ++
Sbjct: 138 SEDDRDLHCKISKPWE 153
>03_02_0044 -
5245204-5245538,5245946-5246093,5246182-5247395,
5247730-5248003,5248141-5248293
Length = 707
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 20 CIVLMTSITKFAPRCC-VCELPIMPKKGQEETVTVVALDRS 139
C+ SI+ F+P+CC V L + + +E +T +L S
Sbjct: 578 CLDKAKSISSFSPKCCHVRGLILQAQSLHQEALTAFSLSLS 618
>02_05_0358 + 28264928-28266049
Length = 373
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 32 MTSITKFAPRCCVCELPIMPKKGQEETVTVVALDRSFHVKC 154
+ ++ K +P C VC P P + E + A +FH C
Sbjct: 139 LAALPKSSPDCAVCLSPFAP---EAELRLLPACRHAFHASC 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,569,277
Number of Sequences: 37544
Number of extensions: 132696
Number of successful extensions: 294
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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