Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5661
         (302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   1.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   1.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   7.7  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    20   7.7  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +2

Query: 200 GRGCYPLDDHILCKTCNAR-RVRLLTNVMTTDL 295
           GRG Y  DD      CN    +R+++  M  DL
Sbjct: 206 GRGIYHNDDKTFLVWCNEEDHLRIISMQMGGDL 238


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 152 CYRCEDCGLLLSS 190
           CY C+ CG  LS+
Sbjct: 371 CYTCDVCGKTLST 383


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 239 KTCNARRVRLLTNVMTTD 292
           K+  ARR   +TN +T D
Sbjct: 252 KSIRARRTECVTNSVTCD 269


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 155 YRCEDCGLLLSS 190
           +RCE C  +L+S
Sbjct: 3   FRCEPCNKILTS 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,261
Number of Sequences: 438
Number of extensions: 1586
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)