Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5660
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0219 - 15519076-15520050,15520376-15520579,15520755-155207... 37 0.019
06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652 34 0.099
12_02_1102 + 26088927-26090321 31 0.70
02_03_0372 + 18273141-18274767,18275136-18276023,18276117-18276523 31 1.2
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 29 2.8
01_07_0233 + 42191465-42191953,42191976-42192272,42192310-42192690 29 3.7
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 29 4.9
05_03_0416 + 13684604-13688050 29 4.9
05_01_0257 + 1967471-1967695,1968571-1969395 29 4.9
01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622 29 4.9
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 29 4.9
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 28 6.5
12_02_0226 + 15887835-15891188 28 8.6
12_01_0846 - 7920960-7921112,7921247-7921373,7921455-7921585,792... 28 8.6
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 28 8.6
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 28 8.6
06_01_0920 + 7098007-7098065,7098538-7099345 28 8.6
05_06_0015 + 24953918-24954359,24955622-24955857,24955945-249560... 28 8.6
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 28 8.6
>03_03_0219 -
15519076-15520050,15520376-15520579,15520755-15520791,
15522025-15522104
Length = 431
Score = 36.7 bits (81), Expect = 0.019
Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 7/150 (4%)
Frame = +2
Query: 191 VKKRPPTWRHNVRAKYTEGDTATKGDLMHIQEELMYEN-----DLLKMNIELMHAHINKI 355
++KRP + HNV +T G +KG L + EL N D+ N E MH + +I
Sbjct: 207 LRKRPLVFFHNVNNTFTVGPLLSKGTLDTV-PELQGSNETNVTDVGAQNTECMHENTEEI 265
Query: 356 NNML-HDLIVSVAKVDERLIGNLMNNSVSSTFLSDDTFLLMPCTNPPAHTSNCYNNSIYK 532
+ +L D KV E +NN V + +DT + + A
Sbjct: 266 DALLCSDSDEGCLKVQE------LNNRVRKYPMQNDTMSVESVASAGASQPAKKRRLSSG 319
Query: 533 EGRWVANTDSSQCIDFS-NYKELAIDDDVE 619
R V +T SS D S + K L+ DDD +
Sbjct: 320 TDRSVVDTASSARPDHSVDQKHLSHDDDAQ 349
>06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652
Length = 717
Score = 34.3 bits (75), Expect = 0.099
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +1
Query: 283 RGADVRKRFAENEH*ADACAYQQDKQYAARPDSFRGQGGRAFDWQSHEQFCFFNIFVGRH 462
+GA+ R R+ N + + + QQ + A RP GQG R D Q ++ C FN F RH
Sbjct: 441 QGANQRVRYT-NPYLGGSSSQQQQPRSAPRPQFMPGQGRR--DVQGQQRLC-FNCFESRH 496
>12_02_1102 + 26088927-26090321
Length = 464
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 298 RKRFAENEH*ADACAYQQDKQYAARPDSFRGQGGRAFDWQSHEQFCFFNIFVGRHVFADA 477
R RF A +C++ +Y A + G G A DW ++ F + + GR FA A
Sbjct: 288 RPRFVAEPVDARSCSFVGTHEYVAPEVASGGAHGAAVDWWAYGVF-LYELIYGRTPFAGA 346
Query: 478 VHQS 489
+++
Sbjct: 347 TNEA 350
>02_03_0372 + 18273141-18274767,18275136-18276023,18276117-18276523
Length = 973
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 302 NDLLKMNIELMHAHINKINNMLH-DLIVSVAKVDERLIGNLMNNSVSSTFLSDDTFLL 472
N +L +++ L + H ++ +LH DL S +DE L +L + ++ L DDT ++
Sbjct: 768 NIMLDVSMALEYLHHRHVDVVLHCDLKPSNVLLDEELTAHLADFGIAKLLLGDDTSVI 825
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -2
Query: 213 QVGGRFLTWCSTLRLMHLLNLQFHVFLERSYISLSIKQCSRVTDSGLFLS-SLMSRHAAF 37
++ G TW STL HLL LER + +K C V + + + +L +H +
Sbjct: 379 ELTGLNTTWVSTLMAQHLLAAADRYALERLKLLCELKLCEDVAINTVANTLALAEQHHCY 438
Query: 36 TWRVVNVDFV 7
+ V + FV
Sbjct: 439 QLKTVCLRFV 448
>01_07_0233 + 42191465-42191953,42191976-42192272,42192310-42192690
Length = 388
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Frame = +2
Query: 569 CIDFSNYKELAI----DDDVEFWIPTFGQH 646
C+D NY EL I DDD EF++P H
Sbjct: 356 CVDTENYSELEIALDTDDDEEFFLPEAEGH 385
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/47 (21%), Positives = 29/47 (61%)
Frame = -1
Query: 409 QTLVHLGHGNYQVVQHIVYLVDMRMHQLNVHFQQIVFVHQLLLNMHQ 269
QT ++GH N +Q +++ ++ + + +++++ ++LLN+H+
Sbjct: 174 QTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHK 220
>05_03_0416 + 13684604-13688050
Length = 1148
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 500 TSNCYNNSIYKEGRWVANTDSSQCIDFSNYKEL 598
T N YN I +WV + D+ +C+D EL
Sbjct: 619 TLNLYNTKITMLPQWVTSIDTLECLDLGYCHEL 651
>05_01_0257 + 1967471-1967695,1968571-1969395
Length = 349
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 503 SNCYNNSIYKEGRWVANTDSSQCIDFSNYKELAIDDDVEF 622
+N N ++K WV TD D + Y++ A DV+F
Sbjct: 280 NNLQNRVLFKSD-WVLRTDGDAAADLAEYRDNATKWDVDF 318
>01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622
Length = 288
Score = 28.7 bits (61), Expect = 4.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 566 ATSPCWPPNALLCKCCCCS 510
A SP W P C+ CCC+
Sbjct: 231 ACSPAWTPRRPRCRRCCCA 249
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/47 (21%), Positives = 29/47 (61%)
Frame = -1
Query: 409 QTLVHLGHGNYQVVQHIVYLVDMRMHQLNVHFQQIVFVHQLLLNMHQ 269
QT ++GH N +Q +++ ++ + + +++++ ++LLN+H+
Sbjct: 174 QTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHK 220
>09_06_0048 +
20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 320 NIELMHAHINKINNMLHDLIVSVAKVDERLIGNLMNNSVSSTFLSDDTFLLM 475
NI LM+ N+L +LI V DE+++G+ + +S T D + L+
Sbjct: 817 NISLMYLR----RNLLEELISEVDTFDEKVLGSFVRIRISGTGQRQDIYRLV 864
>12_02_0226 + 15887835-15891188
Length = 1117
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 497 HTSNCYNNSIYKEGRWVANTDSSQCIDFSNYKELAIDDDVEFWIPTFGQHNLSRQLGKM 673
HT+ YN +Y G N + + + KE+ + D ++ W + +RQ+GKM
Sbjct: 240 HTTETYNAMLYIAGE-ERNFGAMEKLMDEMDKEMCLKD-IKTWTIVISSYGKARQIGKM 296
>12_01_0846 -
7920960-7921112,7921247-7921373,7921455-7921585,
7921992-7922033,7922126-7922167,7922416-7922508,
7922590-7922685,7923281-7923448,7923519-7923594,
7923687-7923766,7923855-7923950,7924023-7924392,
7925356-7925431,7925559-7925649
Length = 546
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 65 DKNNPESVTRE-HCLIDNDIYDLSKNTWNCKFNRCIKRKVEHQVKKRPPTWRHNVR 229
D N PE +T + CL + ++ ++ + C +K ++ ++PP +H R
Sbjct: 386 DLNLPEDITHQITCLANPSLFSCNEIHFGCCTMDILKHLSGEEISRKPPGEKHGDR 441
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 27.9 bits (59), Expect = 8.6
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +2
Query: 389 AKVDERLIGNLMNNSVSSTFL----SDDTFLLMPCT---NPPAHTSNCYNNSIYKEGRWV 547
+K D + +++VSST L +DDT + T + + T Y I KE + V
Sbjct: 348 SKADPQSNSFSSSSTVSSTKLPSSWNDDTSTVPKMTEGRDSLSKTLKPYKPGIAKETQAV 407
Query: 548 ANTDSSQCIDFSNYKELAIDDDV 616
+ +SS IDFS DDDV
Sbjct: 408 TSLESSLDIDFSTIPSAWNDDDV 430
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 27.9 bits (59), Expect = 8.6
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +2
Query: 389 AKVDERLIGNLMNNSVSSTFL----SDDTFL---LMPCTNPPAHTSNCYNNSIYKEGRWV 547
+K D + +++VSST L +DDT +M + + T Y I KE + V
Sbjct: 405 SKTDPQSNSFSSSSTVSSTKLPSSWNDDTSTVPKMMEGRDSLSKTLKPYKPGIAKETQAV 464
Query: 548 ANTDSSQCIDFSNYKELAIDDDV 616
+ +SS IDFS DDDV
Sbjct: 465 TSLESSLDIDFSTIPSAWNDDDV 487
>06_01_0920 + 7098007-7098065,7098538-7099345
Length = 288
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 117 IYMIFLKTRGIASLTDALNAKSSTKSRNGRPLGATTLEPS 236
IYM R +ASLT+ L AK+ S PL + EPS
Sbjct: 122 IYMTLNFIRVLASLTEMLRAKNQEPSPPPSPLLSGVQEPS 161
>05_06_0015 +
24953918-24954359,24955622-24955857,24955945-24956085,
24956188-24956619,24956847-24956948
Length = 450
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 575 LCIATSPCWPPNALLCKCCCCSNYWCVPADW--CTASAKTC 459
LC++ S C NA+ CC N +C P D+ C +++ C
Sbjct: 379 LCLSWSCCELDNAV----CCKDNRYCCPHDYPVCDTASQRC 415
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 27.9 bits (59), Expect = 8.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 649 PITTVGKDASGWVVYLPNKKATSN 720
P+TT+ + GW Y+PN +N
Sbjct: 330 PLTTIYQAQQGWSTYMPNDSGETN 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,488,731
Number of Sequences: 37544
Number of extensions: 402317
Number of successful extensions: 1358
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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