Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5659
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.66 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    29   0.87 
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    29   0.87 
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    28   1.2  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.2  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   4.7  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    26   6.1  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   6.1  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   8.1  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   8.1  

>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 118 RKK*SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPP--TKPTRVSRNRSSKA 291
           R+K  + S     + K   + P K ++KRK  E+S     LH P  +   +  +N++ K 
Sbjct: 125 RRKQELVSKKAEASRKMEVKAPAKESKKRKVNELSQDVISLHSPKESNARKTKKNKNKKK 184

Query: 292 K 294
           K
Sbjct: 185 K 185


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +2

Query: 446 PSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPRAGPISESSPN 613
           P ++ +L    S + S  T Q   P+     RPEP+ S     CP   P     P+
Sbjct: 117 PLSDSQLDTGDSPATSETTVQDYNPQVQSYCRPEPLSSNHVRSCPPFPPTQHHHPH 172


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 410 VSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPK 523
           +++  PT  +  PS  P    S  KSV+RA+E  P  K
Sbjct: 194 ITEANPTCEKRKPSRSPSPMLSKKKSVARASENEPSAK 231


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
 Frame = +2

Query: 368 SKPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPR---SGSKSVSRATEQFPEPKSGPV- 535
           +KPG+   V     + K +   +  + S E K+ R   S S+S+S  TEQ   PK  PV 
Sbjct: 150 TKPGEPE-VKQETNLQKEKKESKVKLESKEEKISRNLRSSSRSISPVTEQPQSPKIQPVI 208

Query: 536 -ARPEPVWSEPT*LCPRAGPISESSPN 613
             + E    + + +  R   +S SS N
Sbjct: 209 PEKKEKSEKKESSMTLRKRSVSPSSQN 235


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +1

Query: 130 SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKISI 303
           S+  L  S A K  Q+ P K  R+R      S + GL+P   PT  S+ RS +   S+
Sbjct: 342 SLSPLDHSSAEKEMQKAPAKNKRRRT----GSLETGLYPKESPT-PSKKRSKRVLWSL 394


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 407 TVSKLRPTIRESIPSAEPKLPRSGSKSVS 493
           TVS   P+  E  PS+ P LP +GS+S S
Sbjct: 114 TVSIASPSTPELPPSSSPLLPPNGSESSS 142


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 25/81 (30%), Positives = 34/81 (41%)
 Frame = +2

Query: 365 NSKPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARP 544
           +SKP +         V   +PT   S PSA P       +S    ++  P  +    A+P
Sbjct: 273 HSKPSETVKSEQETAVEHPKPTATTSAPSASPTGVPVEEESHKATSDAVPPAE----AKP 328

Query: 545 EPVWSEPT*LCPRAGPISESS 607
           EPV   P     RA P SES+
Sbjct: 329 EPV---PASAAERA-PTSEST 345


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 154 KATKTSQRKPIKLNRKRKCKEISSTQHGL---HPPTKPTRVSRNRSSKAKISI 303
           + TKT  R+  K+ R+RK +   +++       P  KP   SR    K   ++
Sbjct: 532 RVTKTQSRRETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERKKVNYAL 584


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 605 SPNMFG-NNQNQLQVQTGQYGHNTGQNYQTSQFNGT 709
           S NM+G +NQ+   +  G YG N      T Q   T
Sbjct: 446 STNMYGQSNQDPYSMSNGVYGSNYSAQPSTMQMQAT 481


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 561 SLHTGSGLATGPDFGSGNCSVALETDFE 478
           S+H+      G D G+GN +  LETD E
Sbjct: 15  SVHSREVSVNGSDSGTGNDAYKLETDDE 42


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 181 PIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKISITIML 315
           P +LNR R  KE    +  LH     +R +  +SS    SI++ L
Sbjct: 113 PKRLNRSRSSKEDMYRRRSLHGLPSLSRRNSKKSSTLSRSISLHL 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,474
Number of Sequences: 5004
Number of extensions: 53771
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)