Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5658
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    25   0.47 
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    25   0.47 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.6  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 238 LNSNLTPRLQNSCIPSKSQYKKQFI*YAKYFSIVFGTKPVKINVVWATLKSRYD 399
           L  NL   L+N C P   + KK      K    +   KP     +W  L+++YD
Sbjct: 63  LKRNLPDALENECSPCSEKQKKI---ADKVVQFLIDNKP----EIWVLLEAKYD 109


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 238 LNSNLTPRLQNSCIPSKSQYKKQFI*YAKYFSIVFGTKPVKINVVWATLKSRYD 399
           L  NL   L+N C P   + KK      K    +   KP     +W  L+++YD
Sbjct: 63  LKRNLPDALENECSPCSEKQKKI---ADKVVQFLIDNKP----EIWVLLEAKYD 109


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 472 YNGIFEHDFDPLQNVGFARNLAYLLRTDDNSIFKKNIEIQ 591
           YNG  E + +  QN+  A+N     R +D SI ++   I+
Sbjct: 407 YNGSMEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIE 446


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 440 SVLKAWDFEL*ILRS*RDFSVAHTTLIFTGFVPKTMLKY 324
           ++LKA   E+ +LR  R + V   ++IF    P T   Y
Sbjct: 409 ALLKACSSEVMMLRMARKYDVQTDSIIFANNQPYTKDSY 447


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 497 LTPFKMSDLLEIWHTY 544
           +TPF +  LL++W  Y
Sbjct: 182 VTPFTVLPLLKVWGRY 197


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 497 LTPFKMSDLLEIWHTY 544
           +TPF +  LL++W  Y
Sbjct: 182 VTPFTVLPLLKVWGRY 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,039
Number of Sequences: 438
Number of extensions: 2876
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)