Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5657
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 67 2e-12
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 6e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 2e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 2e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 44 3e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 41 1e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 41 1e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 41 1e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 40 2e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 40 2e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 39 7e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.002
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 36 0.005
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 36 0.005
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 35 0.009
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 35 0.012
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 34 0.016
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 34 0.021
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 33 0.027
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.063
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 29 0.45
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 0.45
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 28 1.0
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 1.0
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 27 1.8
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 2.4
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 27 3.1
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 5.5
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 7.3
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 9.6
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 9.6
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb... 25 9.6
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 67.3 bits (157), Expect = 2e-12
Identities = 29/80 (36%), Positives = 47/80 (58%)
Frame = +2
Query: 362 ESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 541
E+ P + + GL W+TT++++RDYF FG++L V RD+ TG S+GFGF+ F
Sbjct: 154 ETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKN 213
Query: 542 YEAQLRALGRRHMIDGRWCD 601
+ + + H +DG+ D
Sbjct: 214 PKCVNEVMSKEHHLDGKIID 233
Score = 44.8 bits (101), Expect = 1e-05
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Frame = +2
Query: 347 AFPRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGF 526
A PR E + + + + V G+P TEE R++F+ FG +L + D TG +GFGF
Sbjct: 237 AIPREE----QEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGF 292
Query: 527 IKFAEYEAQLRALGRRHM-IDGRWCDVRIPNGKDGSSTAH 643
+ + A + + ++ I G+ +V+ K +H
Sbjct: 293 VTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSH 332
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 45.6 bits (103), Expect = 6e-06
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +2
Query: 395 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 574
+IV G+ + TEE V D F+ FG + + + D RTG KG+ I++A E +A+ +
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 575 HM 580
++
Sbjct: 72 NL 73
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +2
Query: 389 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 565
+DL V G+ + E+ ++ FS FG + V++ R+ T S+GFGF+ F+ E A+
Sbjct: 101 NDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAI 159
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = +2
Query: 377 RPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQL 556
R + L V L T EE +RD F FG + V + +D TG +KGF F+ + + + +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAI 257
Query: 557 RALGR 571
+A R
Sbjct: 258 KARDR 262
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 43.6 bits (98), Expect = 3e-05
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +2
Query: 389 SDLIVLG-LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 565
SD + +G L + TE+ + F GD+ +++ D ++G KGFG++ F++ ++ + +
Sbjct: 365 SDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV 424
Query: 566 GRR-HMIDGRWC--DVRIPNGKDGS 631
H I GR C D P GS
Sbjct: 425 EMNGHFIAGRPCRLDFSTPRTGGGS 449
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +2
Query: 410 LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR--HMI 583
L W ++ + F +G ++ +V D ++G SKG+G++ F EA A+ I
Sbjct: 270 LSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEI 329
Query: 584 DGRWCDVRIPN 616
DGR ++ + N
Sbjct: 330 DGRMVNLDLSN 340
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 41.1 bits (92), Expect = 1e-04
Identities = 25/87 (28%), Positives = 43/87 (49%)
Frame = +2
Query: 389 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 568
S L V L ++TT+ ++++F G + V++ TG KGFGF+ F + + ++A+
Sbjct: 228 SILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287
Query: 569 RRHMIDGRWCDVRIPNGKDGSSTAHRK 649
H W R+ G+D S K
Sbjct: 288 LGH---NSW---RLEYGEDRSKRMRNK 308
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +2
Query: 422 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 562
T + + D FS FG +L + +G+SKG+GF+ F + EA +RA
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 41.1 bits (92), Expect = 1e-04
Identities = 25/81 (30%), Positives = 43/81 (53%)
Frame = +2
Query: 395 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 574
L V + + T+E V+ F FGD+ V ++RD + SKGFG+I++ + AL +
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQ-NRSKGFGYIQYRNPISARNALEKM 400
Query: 575 HMIDGRWCDVRIPNGKDGSST 637
+ D ++R+ G D +T
Sbjct: 401 NGFDLAGRNMRVCLGNDKFTT 421
Score = 30.3 bits (65), Expect = 0.26
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 419 KTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 565
+ T + D+F G + Q+ RD +G SKG +++F ++ A+
Sbjct: 250 RLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI 298
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 40.3 bits (90), Expect = 2e-04
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +2
Query: 368 PPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 547
P RC + V L ++ EE + YF G + V++ RD +T L KGF +I+F +
Sbjct: 265 PQDTKRC--VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTM 322
Query: 548 AQLRA--LGRRHMIDGR 592
+A L + M +GR
Sbjct: 323 GVDKALLLNEKKMPEGR 339
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +2
Query: 395 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 535
L V LP E+ +R YFS FG +L +++ R+ +TG SK + FI+F
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEF 153
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +2
Query: 389 SDLIVLG-LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 565
S I +G L + E+ + FS FG+ + + + RD TG SKGF F+K+ + + + A+
Sbjct: 30 SAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAV 89
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +2
Query: 389 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 562
S L V L ++T ++ + ++FS G + V + TG ++G+GF+ F+ E RA
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Score = 35.1 bits (77), Expect = 0.009
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +2
Query: 395 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 547
+ V L ++ TE+ + ++F FG L ++ +D T S G GFIKF YE
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF-RYE 328
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 503 GLSKGFGFIKFAEYEAQLRAL 565
G SKGFGF++F ++ L AL
Sbjct: 536 GRSKGFGFMQFISHKYALMAL 556
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = +2
Query: 389 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 565
+++ + L + TE+ D F FG++ + + +D + +GFGF+ +A +E +A+
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAV 318
Score = 33.5 bits (73), Expect = 0.027
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 431 EAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 565
+A+ D FS+FG +L +V D G +KG+GF+ F E+ A+
Sbjct: 182 KALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAI 225
Score = 33.1 bits (72), Expect = 0.036
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +2
Query: 392 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 565
+L + L + +E ++ FS+FG + ++ D + G SKGFGF+ + E +A+
Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 35.9 bits (79), Expect = 0.005
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 383 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQL 556
R ++ + GLP T++E + Y + FG + + D T L KG+GF F E ++ L
Sbjct: 294 RTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSAL 351
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.1 bits (77), Expect = 0.009
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 395 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 562
L + L + E+ ++ F FG L V + D +T KGF +I F + + +RA
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRA 380
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.7 bits (76), Expect = 0.012
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 395 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 535
+ + LP E+ V + FGDLL Q+ ++ G SKGF F +F
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEF 358
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 362 PRVGRHTNIGRPASPPP 312
PR R++++GR SPPP
Sbjct: 87 PRSLRYSSVGRSRSPPP 103
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 34.3 bits (75), Expect = 0.016
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +2
Query: 395 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 562
L V L +E++ FS + L+ +V RD R G ++GFGF+ F + + L+A
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLKA 86
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 33.9 bits (74), Expect = 0.021
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 389 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMV-QVKRDTRTGLSKGFGFIKFAEYE 547
++L V L E + D FS+ G L+ QV RD G SKG+GF+ + +E
Sbjct: 99 ANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARD-ENGRSKGYGFVSYDSFE 151
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 33.5 bits (73), Expect = 0.027
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 416 WKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 541
+ T E ++ +F+S G + V + D TG KGF +I+F+E
Sbjct: 64 YSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSE 105
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.063
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +2
Query: 437 VRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL--GRRHMIDGRWCDVRI 610
V+DYF +G LL V+V +D L + + F++F + +AL + ++DGR +RI
Sbjct: 99 VKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKALSEAQNTILDGR--HIRI 153
Query: 611 PNGK 622
K
Sbjct: 154 ERAK 157
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.5 bits (63), Expect = 0.45
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +2
Query: 410 LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL--GRRHMI 583
LP + + S + ++ D TGLS+ +GF++F+ + Q AL + ++
Sbjct: 190 LPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLC 249
Query: 584 DGRWCDVRIPNGKDGSSTA 640
GR + + + K +S A
Sbjct: 250 QGRPLRISVASPKSRASIA 268
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 29.5 bits (63), Expect = 0.45
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 446 YFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 565
+ S + ++ D +T +S+G+GF++F + Q AL
Sbjct: 206 FASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSAL 245
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 380 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDT 496
P + + V LP T + +R YF FG++L QV ++
Sbjct: 173 PNNTAVYVHQLPENITTQELRSYFLHFGEILYTQVNNNS 211
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 431 EAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE-YEA 550
+ + + FS FG + + T +SKG+GF+ F+ +EA
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEA 475
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 92 EEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGSL 205
E + R+S ++ + P+S +P++ PTE+ GSL
Sbjct: 195 EALSSSRFSRPQVGQQQPLSSAFPFQPVKQPTEQPGSL 232
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 476 VQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 565
++++ + R G +GFGF+ FA E Q RA+
Sbjct: 248 IKLRGEQRRG--RGFGFVSFANAEDQSRAI 275
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 98 VEGQRWSVSKMTEYVPVSEGEQDEPIELPTEE 193
V Q W + E SE E+ E +E PTEE
Sbjct: 424 VSTQHWGELEEFEEEESSEEEESEDVEYPTEE 455
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 146 VSEGEQDEPIELPTEEDG 199
+ EGE+DE +ELP E G
Sbjct: 173 LEEGEEDELLELPPETSG 190
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 604 NIAPAPVYHVSAA*CTQLSFVLGEFDEAKTFG 509
N A P+YHV A+ C S + D AKT+G
Sbjct: 470 NGALLPIYHVDASAC---SISISLMDIAKTYG 498
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 95 EVEGQRWSVSKMTEYVPVSEGEQDEPIELPTE 190
++ RW K+TE ++GE +E + LP E
Sbjct: 976 QLSANRWQPKKLTEKPAETKGEDEEAL-LPPE 1006
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +2
Query: 509 SKGFGFIKFAEYEAQLRALGRRHMIDGR---WCD 601
S GF FIKF ++ GR H G+ +CD
Sbjct: 201 SDGFDFIKFLHVCVCVKCHGREHRSSGKNFVYCD 234
>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 392 RSIVVEAAAIPRVGRHTNIGRPASP 318
+ +V+ + I ++GRHTN SP
Sbjct: 17 KKLVISPSTIYKIGRHTNKSTSPSP 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,091
Number of Sequences: 5004
Number of extensions: 45944
Number of successful extensions: 161
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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