Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5653
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   1.1  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    27   1.1  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    25   5.8  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   5.8  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    25   5.8  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    25   7.7  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   7.7  

>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 362 CGFDLYYMIPSPW-KSIVNIC*VRISLEKFVLVCGIRASV 246
           CGF++Y+ + SPW +   + C  R+ L   + V G  + +
Sbjct: 555 CGFNIYFPLMSPWIQRFRSRCCFRLGLLFSIFVVGFSSFI 594


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 350 LYYMIPSPWKSIVNIC*VRISLEK 279
           LYY +P PW   VN+C + ++ E+
Sbjct: 241 LYYSVPCPWLQ-VNLCRILLACER 263


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 229 IKRKRLTDARIPQ---TSTNFSNEIRTQQMFTIDFHGEGIM*YKSNPQNY 369
           +K +R TDA   Q    S +++  +  Q   T+DFH +G + Y +    Y
Sbjct: 88  LKFERHTDAENVQFEILSDDWTKSVHLQTDRTVDFHSQGGIHYSTRIPKY 137


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 398 ESGAGSTTALPYFCREA 448
           E+G+G TT LP F  EA
Sbjct: 442 ETGSGKTTQLPQFLHEA 458


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 93  STAIARAGVSKFSQVEPVSSPIP 161
           S +   AG+ KF+ VE +++P+P
Sbjct: 529 SVSSGSAGIPKFTVVEGIAAPLP 551


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 109 LAIAVLRRIYHWTGIATHEPV 47
           LA+A+  R+Y W+GI++   V
Sbjct: 264 LAVALASRVYLWSGISSEVTV 284


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 346 YKSNPQNYNLRN 381
           YK  P NYNLRN
Sbjct: 166 YKGGPLNYNLRN 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,846,562
Number of Sequences: 5004
Number of extensions: 36669
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)