Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5653
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical pr...    29   1.3  
X83887-1|CAA58764.1|  498|Caenorhabditis elegans alpha-1 subunit...    27   5.1  
AY523511-1|AAR98633.1|  498|Caenorhabditis elegans acetylcholine...    27   5.1  
AF022973-7|AAN84815.1|  480|Caenorhabditis elegans Acetylcholine...    27   5.1  
AF022973-6|AAC25796.1|  498|Caenorhabditis elegans Acetylcholine...    27   5.1  
AL110477-17|CAJ43446.1|  332|Caenorhabditis elegans Hypothetical...    27   6.8  
U29096-2|AAX88830.1|  133|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AC024798-10|AAK29912.1|  254|Caenorhabditis elegans Hypothetical...    27   9.0  

>Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical
           protein K01C8.5 protein.
          Length = 707

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 452 LLLHGRNKAGLWYYPRRTHDVHQQLRK 372
           +L  GR K  + YYP R H +  Q+R+
Sbjct: 153 MLYKGRRKESMGYYPNRNHLMRDQIRQ 179


>X83887-1|CAA58764.1|  498|Caenorhabditis elegans alpha-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 498

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 103 IAVLRRIYHWTGIATHEPVTG*RRRRRKNNW 11
           + +L RIYH   I T   + G +  +  NNW
Sbjct: 433 LLILHRIYHELKIVTKRMIEGDKEEQACNNW 463


>AY523511-1|AAR98633.1|  498|Caenorhabditis elegans acetylcholine
           receptor (57.1 kD)alternative variant 1 protein.
          Length = 498

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 103 IAVLRRIYHWTGIATHEPVTG*RRRRRKNNW 11
           + +L RIYH   I T   + G +  +  NNW
Sbjct: 433 LLILHRIYHELKIVTKRMIEGDKEEQACNNW 463


>AF022973-7|AAN84815.1|  480|Caenorhabditis elegans Acetylcholine
           receptor protein16, isoform b protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 103 IAVLRRIYHWTGIATHEPVTG*RRRRRKNNW 11
           + +L RIYH   I T   + G +  +  NNW
Sbjct: 433 LLILHRIYHELKIVTKRMIEGDKEEQACNNW 463


>AF022973-6|AAC25796.1|  498|Caenorhabditis elegans Acetylcholine
           receptor protein16, isoform a protein.
          Length = 498

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 103 IAVLRRIYHWTGIATHEPVTG*RRRRRKNNW 11
           + +L RIYH   I T   + G +  +  NNW
Sbjct: 433 LLILHRIYHELKIVTKRMIEGDKEEQACNNW 463


>AL110477-17|CAJ43446.1|  332|Caenorhabditis elegans Hypothetical
           protein Y113G7B.1b protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 310 TFVEYVFH*KNLYSSVGFEHR*VVYVLS-FRPRRLQSDFLF 191
           T VEY+FH K++Y SV  +   V+ +LS F+P  L+    F
Sbjct: 159 TNVEYMFHAKSIYLSVA-KFSNVISILSHFKPGFLEEIVFF 198


>U29096-2|AAX88830.1|  133|Caenorhabditis elegans Hypothetical
           protein F30H5.5 protein.
          Length = 133

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +1

Query: 244 LTDARIP--QTSTNFSNEIRTQQMFTIDFHGEGI 339
           +T+A I   Q +T   NE  T+Q+FT+D++   I
Sbjct: 31  ITNAHIKAIQVATRSMNETATRQLFTLDYNNPKI 64


>AC024798-10|AAK29912.1|  254|Caenorhabditis elegans Hypothetical
           protein Y48G9A.12 protein.
          Length = 254

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 254 LESHRRVQIFLMKYVLNKCSRLTSTVKESCNINQTRKIII 373
           LE+H    I L K +  KC+ L   + ES  I++  + +I
Sbjct: 214 LENHNFRHILLEKAIFAKCAFLPKNLSESPQIDEFSRFLI 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,130,007
Number of Sequences: 27780
Number of extensions: 197735
Number of successful extensions: 385
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)