Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5645
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1358 - 29548440-29549315                                         27   2.2  
05_01_0553 + 4849535-4849553,4850727-4851913                           28   6.7  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    28   8.8  

>06_03_1358 - 29548440-29549315
          Length = 291

 Score = 27.1 bits (57), Expect(2) = 2.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 101 APPCPPRGQGSQQVEDDRTKEADAAKESRP 12
           APP PP     ++  +D  KEA   + S P
Sbjct: 95  APPAPPAPAAQERRPEDAAKEAQEKENSSP 124



 Score = 21.4 bits (43), Expect(2) = 2.2
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -3

Query: 185 YLALEGSSKRPSGRSSTRWSNSVLSGHQAPPCPP 84
           +LA +G S  PS   S       L     PP PP
Sbjct: 36  HLAADGDSALPSSLESRFRKLKSLPAAPLPPPPP 69


>05_01_0553 + 4849535-4849553,4850727-4851913
          Length = 401

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = -3

Query: 170 GSSKRPSGRSSTRWSNSVL-----SGHQAPPCPPRGQGSQQVEDDRTKEADAAKESR 15
           GSSK  S +SS R S  V       GH    CP    GS   ED +  E    K+ +
Sbjct: 121 GSSKHYSNKSSGRHSARVCYVCKEPGHFIADCPHLKDGSHMKEDKKKSEKKDEKKEK 177


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 116  LSGHQAPPCPPRGQG 72
            L GHQAPP PP  +G
Sbjct: 1130 LGGHQAPPAPPLPEG 1144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,737,261
Number of Sequences: 37544
Number of extensions: 428372
Number of successful extensions: 1203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)