Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5645
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    28   0.10 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.74 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.9  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 233 LKGETDFDFMFIGTRNYLALEGSSKRPSGRSSTRWSNSVL 114
           ++GE    F F GT  YL+ E   K P G+    W+  V+
Sbjct: 62  VQGEAQAWFGFAGTPGYLSPEVLKKEPYGKPVDIWACGVI 101


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -3

Query: 170 GSSKRPSGRSSTRWSNSVLSGHQAPPCPPRGQGSQQVEDDRTKEADAAKE 21
           GS  R   R  T ++N    G           G+Q   +DR K+  AA+E
Sbjct: 90  GSRGRGGNRGRTGFNNKNKDGDDNNDYEDNDYGNQDNRNDRRKKTFAARE 139


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 416 PPDSEWLPSSMDFSNARG 469
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 427 TIRWAVRSSAYKGNQIKAKYLYIVKLNIFI 338
           TI   VRSS  + + +KA  +Y+V   +F+
Sbjct: 286 TISTGVRSSLPRISYVKAIDIYLVMCFVFV 315


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 410 HGPPDSEWLPSSMDFSNARG 469
           H P +  WLP  + ++NA G
Sbjct: 96  HVPSEHIWLPDIVLYNNADG 115


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 164  SKRPSGRSSTRWSNSV-LSGH-QAPPCPPRGQGSQQVEDDRTKEADAAKES 18
            S+   GR S   + ++ +SG  + PP PPR         + +KE++   E+
Sbjct: 1836 SRGSVGRRSVGSARNIPVSGSPEPPPPPPRNHDQNNSSFNDSKESNEISEA 1886


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,225
Number of Sequences: 438
Number of extensions: 4062
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)