Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5644
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 289 1e-79
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 289 2e-79
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 31 0.16
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 0.84
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 28 1.1
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.5
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 3.4
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 26 4.5
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 26 4.5
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 4.5
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 26 4.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.5
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 5.9
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 5.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 5.9
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 5.9
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 7.8
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha... 25 7.8
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 25 7.8
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 289 bits (710), Expect = 1e-79
Identities = 131/177 (74%), Positives = 152/177 (85%)
Frame = +1
Query: 34 YRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAG 213
YRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA
Sbjct: 9 YRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAA 68
Query: 214 RICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVAR 393
RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VAR
Sbjct: 69 RICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVAR 128
Query: 394 VRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLR 564
V IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R
Sbjct: 129 VNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKR 185
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 289 bits (709), Expect = 2e-79
Identities = 131/177 (74%), Positives = 152/177 (85%)
Frame = +1
Query: 34 YRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAG 213
YRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA
Sbjct: 9 YRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAA 68
Query: 214 RICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVAR 393
RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VAR
Sbjct: 69 RICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVAR 128
Query: 394 VRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLR 564
V IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R
Sbjct: 129 VNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKR 185
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 30.7 bits (66), Expect = 0.16
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 31 SYRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALE 207
SY+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE
Sbjct: 33 SYQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLE 92
Query: 208 AG 213
+G
Sbjct: 93 SG 94
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 28.3 bits (60), Expect = 0.84
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Frame = +1
Query: 280 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 447
L P R+ C G GK +G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 448 QVIEALRRAKFKFPGRQKIYVSK 516
AL++A F PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 27.9 bits (59), Expect = 1.1
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Frame = +1
Query: 19 PASESYRYCKNKPYPKSRFCRGVPD-------PKIRIFDLGKKRATVDDFPLCVH 162
PAS S RY K + Y ++ C G P+ P++ F L KRA + P +H
Sbjct: 120 PASVSNRYIKLEYYLEATLCYGTPEGGISPSKPEVLKFPLQLKRAAIPS-PDTIH 173
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 91 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 210
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 3.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 125 RERPLTTFHCACTWCPTNMNS 187
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 567 FTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 448
F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 268 FRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 384 STLRLAKRTTHPSLEPISSS 325
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 567 FTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 448
F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 268 FRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 567 FTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 448
F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 240 FRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 567 FTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 448
F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 268 FRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 4.5
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 112 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 255
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 210 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 94
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 452 SSRLCAVPSSSSPDVKRSTYQRSGVS 529
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 253 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 357
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 5.9
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 77 VGVYLIPRSVSSIWV 121
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.0 bits (52), Expect = 7.8
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 389 HVFALDSPSC--PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRS 559
H+ +LDS S P AL + + VPS SSP VK ++ G S S SLRS
Sbjct: 422 HIPSLDSSSLLTPLALPNKKAFQPVKF-RVPSFSSPLVKPASSSSFGRSHSHLGTSLRS 479
>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 49 FCSTGSSRWPAPLVPN 2
FCS +SR P PL PN
Sbjct: 137 FCSVKTSRRPGPLDPN 152
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 7.8
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 139 QRSLSSYPNRRY-GSWDQVHPDRTSISDTVYFCSTGSSRWP 20
QR+L+S Y G WD+ DRTS S + S + P
Sbjct: 228 QRALASIHVDNYKGLWDKSQSDRTSDSSVNFIESNNTKFMP 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,073
Number of Sequences: 5004
Number of extensions: 56421
Number of successful extensions: 200
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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