Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5643
         (304 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113365-1|AAM29370.1|  366|Drosophila melanogaster LD23375p pro...    29   1.1  
AE014297-1256|AAF54604.1|  366|Drosophila melanogaster CG6672-PA...    29   1.1  
AE014134-444|AAO41162.1|  374|Drosophila melanogaster CG15396-PB...    27   4.6  

>AY113365-1|AAM29370.1|  366|Drosophila melanogaster LD23375p
           protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -2

Query: 216 YTLR*TINSGKELKFCKKTIRNSFLYIHI*NISPEYFEFVYLVFHYKLNL 67
           Y +R  +NS K L F  +  RN FL++ + N+S  + E  Y +    L L
Sbjct: 14  YRIREKLNSWKRLIFSDRNSRNLFLFLLL-NLSFAFVELFYGIVTNSLGL 62


>AE014297-1256|AAF54604.1|  366|Drosophila melanogaster CG6672-PA
           protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -2

Query: 216 YTLR*TINSGKELKFCKKTIRNSFLYIHI*NISPEYFEFVYLVFHYKLNL 67
           Y +R  +NS K L F  +  RN FL++ + N+S  + E  Y +    L L
Sbjct: 14  YRIREKLNSWKRLIFSDRNSRNLFLFLLL-NLSFAFVELFYGIVTNSLGL 62


>AE014134-444|AAO41162.1|  374|Drosophila melanogaster CG15396-PB,
           isoform B protein.
          Length = 374

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
 Frame = +3

Query: 99  RIQNIQGKY----FIYVYIKNYF*LSSYKTLTLFHCLLFIS-TYTIRMGFTLYYYRIYWT 263
           R+++++ +Y    +++V I  YF   S  T+ + H  +F+S +Y + +      +RIY  
Sbjct: 209 RVKDLKRRYNDLHYLFVRINGYF-GGSLLTIIIVHFAIFVSNSYWLFVDIRTRPWRIYAI 267

Query: 264 LLXFIFI 284
           LL   FI
Sbjct: 268 LLNLGFI 274


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,589,767
Number of Sequences: 53049
Number of extensions: 156002
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 570126357
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)