Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5643
(304 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016424-1|AAB65331.2| 617|Caenorhabditis elegans Hypothetical ... 31 0.12
Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 30 0.37
AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 30 0.37
AC136145-1|AAN60521.2| 226|Caenorhabditis elegans Hypothetical ... 28 1.5
AF022967-8|AAB69876.1| 282|Caenorhabditis elegans Hypothetical ... 27 2.6
AF016661-1|AAB66049.2| 514|Caenorhabditis elegans Hypothetical ... 27 2.6
Z81100-1|CAB03194.1| 331|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z75546-1|CAA99889.1| 546|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z81508-6|CAB04147.1| 338|Caenorhabditis elegans Hypothetical pr... 26 4.5
Z72502-12|CAI46558.2| 303|Caenorhabditis elegans Hypothetical p... 26 4.5
U23486-5|AAL38958.2| 326|Caenorhabditis elegans Serpentine rece... 26 4.5
AL110485-6|CAB60353.1| 193|Caenorhabditis elegans Hypothetical ... 26 4.5
Z93377-10|CAB07574.2| 321|Caenorhabditis elegans Hypothetical p... 26 6.0
Z72502-8|CAD44097.1| 374|Caenorhabditis elegans Hypothetical pr... 26 6.0
U58747-3|AAL27233.2| 420|Caenorhabditis elegans Hypothetical pr... 26 6.0
U28928-5|AAQ01535.1| 434|Caenorhabditis elegans Hypothetical pr... 26 6.0
U28928-4|AAA68337.2| 489|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z78546-3|CAB01768.2| 361|Caenorhabditis elegans Hypothetical pr... 25 7.9
U70852-5|AAK29817.2| 322|Caenorhabditis elegans Hypothetical pr... 25 7.9
>AF016424-1|AAB65331.2| 617|Caenorhabditis elegans Hypothetical
protein F39G3.6 protein.
Length = 617
Score = 31.5 bits (68), Expect = 0.12
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Frame = +2
Query: 38 YKFIMLLFVSRFNL*WKTKY-TNSKYSGEI-FHICIYKKLFLIVFLQNFNSFPLF-IVYL 208
YK +LL V+RF+ +KTKY N Y +I +I Y+K V++ ++ P++ + +L
Sbjct: 504 YKPDVLLIVARFSAAFKTKYEENDGYLQQINENIAFYEKFVKTVYI--LDAHPMYPLGFL 561
Query: 209 NVY 217
N+Y
Sbjct: 562 NLY 564
>Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical
protein C33D9.1a protein.
Length = 844
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 51 CFYLFRGSICNGKLNTRIQNIQGKYFIYVY 140
C+YLFRGS+ GKL R ++ + +Y Y
Sbjct: 742 CYYLFRGSL--GKLLDRFMVVRDDFCMYTY 769
>AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho
guanine nucleotideexchange factor FGD-1 protein.
Length = 844
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 51 CFYLFRGSICNGKLNTRIQNIQGKYFIYVY 140
C+YLFRGS+ GKL R ++ + +Y Y
Sbjct: 742 CYYLFRGSL--GKLLDRFMVVRDDFCMYTY 769
>AC136145-1|AAN60521.2| 226|Caenorhabditis elegans Hypothetical
protein E_BE45912.2 protein.
Length = 226
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 86 KTKYTNSKYSGEIFHICIY-KKLFLIVFLQNFNSFPL 193
KTK SKYS EI Y K LF+++ + N SF L
Sbjct: 116 KTKIKKSKYSKEILSRFDYIKWLFMLIIVLNVLSFVL 152
>AF022967-8|AAB69876.1| 282|Caenorhabditis elegans Hypothetical
protein C13A2.4 protein.
Length = 282
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 137 IYKKLFLIVFLQNFNSFPL 193
IY KLF IVF+QN N +
Sbjct: 7 IYSKLFKIVFVQNLNQLKI 25
>AF016661-1|AAB66049.2| 514|Caenorhabditis elegans Hypothetical
protein F02E11.2 protein.
Length = 514
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -2
Query: 156 RNSFLYIHI*NISPEYFEFVYLVFHYKLNL 67
R++F + + I P +FEF++L FH+KL L
Sbjct: 384 RSTFTFFRL--IFP-FFEFIFLKFHFKLLL 410
>Z81100-1|CAB03194.1| 331|Caenorhabditis elegans Hypothetical
protein K08G2.7 protein.
Length = 331
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 123 YFIYVYIKNYF*LSSYKTLTLFHCLLFISTYTIRMGFTLYYYRIYWTL 266
Y+ V +K + L ++ LT+F + + TY I++ + Y W L
Sbjct: 66 YYFVVTVKRMYALQLFQ-LTIFPAIAYFETYWIQVVILIMYPPTGWIL 112
>Z75546-1|CAA99889.1| 546|Caenorhabditis elegans Hypothetical
protein R05D11.1 protein.
Length = 546
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = +2
Query: 65 SRFNL*WKTKYTNSKYSGEIFHICIYK--KLFLI---VFLQNFNSFPLFIVYLNVYNKNG 229
SRF+L W S + E+ + I K + +L+ V+++N + P+F+ + KNG
Sbjct: 388 SRFSLGWYNNPNRSPQTAEVRGL-IGKGVRFYLLAGEVYVENLCNIPVFVQSIGANMKNG 446
Query: 230 F 232
F
Sbjct: 447 F 447
>Z81508-6|CAB04147.1| 338|Caenorhabditis elegans Hypothetical
protein F20E11.10 protein.
Length = 338
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +2
Query: 47 IMLLFVSRFNL*----WKTKYTNSKYSGEIFHICIYKKLFLIVF 166
I+++F +RF + WK K+ + K FH IY +F I+F
Sbjct: 115 IVVIFENRFRVICTFSWKPKWESFKSMFMPFHYFIYTFMFSIIF 158
>Z72502-12|CAI46558.2| 303|Caenorhabditis elegans Hypothetical
protein C08B6.13 protein.
Length = 303
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +2
Query: 143 KKLFLIVFLQNFNSFPLFIVYLNVYNKNGFHFVL 244
+K++ F Q N+F +F+ +LN+++ N +F++
Sbjct: 239 RKIYEPQFNQLPNNFQIFLGWLNIFSANYINFLI 272
>U23486-5|AAL38958.2| 326|Caenorhabditis elegans Serpentine
receptor, class x protein114 protein.
Length = 326
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +2
Query: 95 YTNSKYSGEIFHICIYKKLFLIVFLQNFNSFPLFIVYLNVYNKNGFHFVL 244
+ K + +C+ K + + F ++P+ + YLN Y F+ VL
Sbjct: 35 FARFKLNSGFLVVCMVKSMANNIICMGFIAWPVPVTYLNFYFLPSFYNVL 84
>AL110485-6|CAB60353.1| 193|Caenorhabditis elegans Hypothetical
protein Y46G5A.8 protein.
Length = 193
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 38 YKFIMLLFVSRFNL*WKTKYTN-SKYSGEIFHICIYKKLFLIVFLQNFNSFPLFIVYLNV 214
+K + +L + N+ +Y ++ +F I+ LFL +F++ +P+F++ L V
Sbjct: 124 HKIVTMLLRKKANVFKTQRYEQFCEFLYALFGFYIFSSLFLSIFVRFSFLYPIFLILLIV 183
>Z93377-10|CAB07574.2| 321|Caenorhabditis elegans Hypothetical
protein F13A7.2 protein.
Length = 321
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 225 MGFTLYYYRIYWTLLXFIFIIVTTTL 302
M F Y++R YW L+ I +++ T+
Sbjct: 1 MDFFQYFFRYYWQLVYMICLMLYITM 26
>Z72502-8|CAD44097.1| 374|Caenorhabditis elegans Hypothetical
protein C08B6.11 protein.
Length = 374
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 59 FVSRFNL*WKTKYTNSKYSGEIFHICIYKKLFLIVFLQNFNSFPLFIVYLNVY 217
F+ WK ++ + +F+ I K + IVFL F +FPL +++ +Y
Sbjct: 312 FIRMIKSFWKMNFSLLRL---LFYFAI-KSRWSIVFLIFFIAFPLICIFITLY 360
>U58747-3|AAL27233.2| 420|Caenorhabditis elegans Hypothetical
protein C55F2.1a protein.
Length = 420
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 119 EIFHICIYKKLFLIVFLQNFNSF 187
+I + I+KK F++ FLQNF+ +
Sbjct: 206 DIRSLQIFKKHFMLSFLQNFHKY 228
>U28928-5|AAQ01535.1| 434|Caenorhabditis elegans Hypothetical
protein C44B7.6b protein.
Length = 434
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/37 (24%), Positives = 21/37 (56%)
Frame = +3
Query: 180 TLFHCLLFISTYTIRMGFTLYYYRIYWTLLXFIFIIV 290
+LFH L+F+ + R+GF + + ++ +F ++
Sbjct: 386 SLFHLLIFLPQFECRIGFLFDIFLDFVCIILGMFFVI 422
>U28928-4|AAA68337.2| 489|Caenorhabditis elegans Hypothetical
protein C44B7.6a protein.
Length = 489
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/37 (24%), Positives = 21/37 (56%)
Frame = +3
Query: 180 TLFHCLLFISTYTIRMGFTLYYYRIYWTLLXFIFIIV 290
+LFH L+F+ + R+GF + + ++ +F ++
Sbjct: 441 SLFHLLIFLPQFECRIGFLFDIFLDFVCIILGMFFVI 477
>Z78546-3|CAB01768.2| 361|Caenorhabditis elegans Hypothetical
protein T21H8.2 protein.
Length = 361
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 138 YIKNYF*LSSYKTLTLFHCLLFISTYTIRMGFTLYYYRIYW 260
++++ L+ YK F ++F+ + + TLYYY W
Sbjct: 267 FLRSVLSLTHYKQ---FASIIFVMPHNAFISMTLYYYLFKW 304
>U70852-5|AAK29817.2| 322|Caenorhabditis elegans Hypothetical
protein F45E4.6 protein.
Length = 322
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 39 INLLCFYLFRGSICNGKLNTRIQNIQG 119
+ LCF + G C+GKL ++ + G
Sbjct: 159 VECLCFRQYGGIHCDGKLTYKVSVVNG 185
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,407,449
Number of Sequences: 27780
Number of extensions: 100373
Number of successful extensions: 314
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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