Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5640
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.2  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 469 QEYAYRHKMVLEYFFL 422
           +EY Y HK++L  ++L
Sbjct: 257 EEYLYSHKLLLNRYYL 272


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 469 QEYAYRHKMVLEYFFL 422
           +EY Y HK++L  ++L
Sbjct: 257 EEYLYSHKLLLNRYYL 272


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 548 NNTVSNLPRLIIEKLK 595
           NNTV + PR+II  LK
Sbjct: 136 NNTVIHQPRIIIIDLK 151


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 31   FVKGVTIRNSMKYTYSIKEDTSNEIM 108
            +++GV +   + Y Y I   T NE++
Sbjct: 999  WLEGVHVTPELIYEYQIHPKTLNEVL 1024


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,035
Number of Sequences: 438
Number of extensions: 4512
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)