Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5638
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    29   0.87 
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      27   3.5  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    27   3.5  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   6.1  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   8.1  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 560  TLLMHILFTG*EAKPKDLFLQEFFSYFSDHLRNNIFLFNQLARQILR 700
            TL  +++F+G E K   L  ++   YFS   +N++ +       IL+
Sbjct: 1523 TLSCNVIFSGNERKAYKLIDEKLLQYFSTKTKNSLLIIESSLPHILK 1569


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 285 IHVTNITAHTKAPIALIITNFFISFCSSYAGFMNASRKNQHT 160
           I V N  +  K  + LII++   SFC+S    +NA  K+Q +
Sbjct: 407 IRVQNAPSLIKCGVCLIISSTTPSFCAS-VNLLNADDKSQES 447


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 238 ECNWSFRVGCYIGYVDYGVSNKQSVV 315
           EC+  F + CY  Y+D  +S  +SV+
Sbjct: 146 ECDHEFCLACYRQYLDSRISEGESVI 171


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 593 EAKPKDLFLQEFFSYFSDHLRNNIFLFNQLARQILRNAI 709
           E   K LFLQE F   S       FLF  ++ Q L N +
Sbjct: 221 ENSSKFLFLQELFKNLSPSYSKTFFLF--ISNQFLANTL 257


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 206 EQKLIKKFVIMSAIGAFVW--AVILVTWITVYQTNRVSWGAT 325
           E +++KK  I++ IG F W  A ILV+  T + T  V +G T
Sbjct: 468 ELRMLKKIGIVNTIGNFTWLFAPILVSAAT-FGTFIVLYGKT 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,423
Number of Sequences: 5004
Number of extensions: 61324
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)