Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5638
         (711 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2652|AAO41356.2|  101|Drosophila melanogaster CG33198-P...   147   1e-35
AF512426-1|AAM88323.1|  101|Drosophila melanogaster presenilin e...   145   6e-35
BT021963-1|AAX94784.2|  840|Drosophila melanogaster LD05244p pro...    29   6.2  
AE014296-808|AAF47871.2|  840|Drosophila melanogaster CG15011-PA...    29   6.2  

>AE013599-2652|AAO41356.2|  101|Drosophila melanogaster CG33198-PA
           protein.
          Length = 101

 Score =  147 bits (356), Expect = 1e-35
 Identities = 59/101 (58%), Positives = 75/101 (74%)
 Frame = +2

Query: 62  MDLSKLPNDMKLQLCKSYFKVGCLFLPFVWAVNVCWFFRDAFIKPAYDEQKLIKKFVIMS 241
           MD+SK PN  KL+LC+ YF  G  FLPFVWA+NVCWFF +AF KP + EQ  IK++VI S
Sbjct: 1   MDISKAPNPRKLELCRKYFFAGFAFLPFVWAINVCWFFTEAFHKPPFSEQSQIKRYVIYS 60

Query: 242 AIGAFVWAVILVTWITVYQTNRVSWGATGDALSFIVPLGRA 364
           A+G   W ++L  WI ++QTNR +WGAT D +SFI+PLG A
Sbjct: 61  AVGTLFWLIVLTAWIIIFQTNRTAWGATADYMSFIIPLGSA 101


>AF512426-1|AAM88323.1|  101|Drosophila melanogaster presenilin
           enhancer protein.
          Length = 101

 Score =  145 bits (351), Expect = 6e-35
 Identities = 58/101 (57%), Positives = 75/101 (74%)
 Frame = +2

Query: 62  MDLSKLPNDMKLQLCKSYFKVGCLFLPFVWAVNVCWFFRDAFIKPAYDEQKLIKKFVIMS 241
           M++SK PN  KL+LC+ YF  G  FLPFVWA+NVCWFF +AF KP + EQ  IK++VI S
Sbjct: 1   MNISKAPNPRKLELCRKYFFAGFAFLPFVWAINVCWFFTEAFHKPPFSEQSQIKRYVIYS 60

Query: 242 AIGAFVWAVILVTWITVYQTNRVSWGATGDALSFIVPLGRA 364
           A+G   W ++L  WI ++QTNR +WGAT D +SFI+PLG A
Sbjct: 61  AVGTLFWLIVLTAWIIIFQTNRTAWGATADYMSFIIPLGSA 101


>BT021963-1|AAX94784.2|  840|Drosophila melanogaster LD05244p
           protein.
          Length = 840

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 630 KNSCKKRSFGLASQPVNKMCIKRVHSNKHNFQAM 529
           K++C ++  G    P  K+C K++  NKH  Q++
Sbjct: 411 KHACNRKCCGDQCPPCEKICGKQLSCNKHKCQSV 444


>AE014296-808|AAF47871.2|  840|Drosophila melanogaster CG15011-PA
           protein.
          Length = 840

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 630 KNSCKKRSFGLASQPVNKMCIKRVHSNKHNFQAM 529
           K++C ++  G    P  K+C K++  NKH  Q++
Sbjct: 411 KHACNRKCCGDQCPPCEKICGKQLSCNKHKCQSV 444


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,417,827
Number of Sequences: 53049
Number of extensions: 636659
Number of successful extensions: 1401
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)