Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5637
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    28   1.6  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    26   6.6  

>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 194 DISNSLLKFYISYFSANI 247
           D+   LLKFY  Y+SANI
Sbjct: 196 DVRQELLKFYDKYYSANI 213


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -3

Query: 737 IPNDIVN*EVRKRISNIPKPNSALNGVAIKFSKNCRFASVTF 612
           I NDI+N    K I NIPKP S L    I+ S++   +  TF
Sbjct: 185 IMNDIIN----KDIDNIPKPGSEL----IELSRDSYNSQATF 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,609
Number of Sequences: 5004
Number of extensions: 50386
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)