Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5636
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.1  
AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor pr...    21   6.7  
AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor pr...    21   6.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 332 LVLHPVLKAGEA*QFIQSFGQCSSVSKKFDGF 237
           ++LH    AG+A  FI   G   S+ +KF G+
Sbjct: 1   MLLHNKTLAGKALAFIAEEGYVPSMREKFLGW 32


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 332 LVLHPVLKAGEA*QFIQSFGQCSSVSKKFDGF 237
           ++LH    AG+A  FI   G   S+ +KF G+
Sbjct: 1   MLLHNKTLAGKALAFIAEEGYVPSMREKFLGW 32


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/49 (18%), Positives = 21/49 (42%)
 Frame = +2

Query: 263  YYIGQKIE*IVKPHQLSILGVELEISNNYFLEFQSQRNKS*LSILSMTF 409
            YY+G ++    KP+    +    E    + L+  + +  +  S++   F
Sbjct: 1012 YYVGYRLSSSEKPYMFETVDFSKEDGKEHHLQIMNLKTYTQYSVVVQAF 1060


>AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 216 LTRMTQVNRLSIRLDANLF 160
           L   T VN L I +DAN+F
Sbjct: 59  LLAQTLVNILQILIDANVF 77


>AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 216 LTRMTQVNRLSIRLDANLF 160
           L   T VN L I +DAN+F
Sbjct: 59  LLAQTLVNILQILIDANVF 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,516
Number of Sequences: 438
Number of extensions: 2206
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)