Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5635
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.3
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 26 5.3
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 26 5.3
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 26 5.3
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 5.3
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 25 7.0
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 7.0
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 25 9.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.2
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 25 9.2
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 25 9.2
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 541 TAMDGSIPQRTGVFAIITDNSGVRPKIP 624
T M PQRTG+ ++ +G++P++P
Sbjct: 668 TGMQPMAPQRTGMQPMMPQRTGMQPQMP 695
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 562 PQRTGVFAIITDNSGVRPKIPQ 627
PQRTG+ + +G++P +PQ
Sbjct: 665 PQRTGMQPMAPQRTGMQPMMPQ 686
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 371 PFKVLEGTNQFLSTCIIAGRWKPGG 297
P+K+L+ T + +S + G KPGG
Sbjct: 169 PYKILDLTAECISLMLTLGNVKPGG 193
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 516 LLINQSVINSNDSCLRVDLERDRCAVS 436
LLI++S N + +C R+ ++C+VS
Sbjct: 241 LLISRSCFNDDQACERIRKNLEQCSVS 267
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 352 PSNTLKGTPITRVYSDKTGTEAVTYGLEADGASVPFEINPQTGVVTVNDTLIDKEN 519
P + +G+PI +KT E ++Y L+ G VP + + + G T+ D + N
Sbjct: 209 PEFSAEGSPILDKRDEKTRLELLSYILKLLGLKVPKDTS-KCGQPTLTDQYLFPNN 263
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 143 LSYTCTLHFLYTSTRFKSFILQSNYRPSHYNTS 45
L+ LH+LYT T + L S + P N S
Sbjct: 680 LAVAILLHYLYTDTLLSPWHLDSRFSPLKENLS 712
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 331 VERNWFVPSNTLKGTPITRVYSDK 402
+E++ F+P + LKGT +T + +K
Sbjct: 447 IEKSKFIPISGLKGTNLTSISQEK 470
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +1
Query: 283 TSSQQPPGFHLPAIMHVERNWFVPSNTLKGTPITRVYSDKTGTEAVTYGLEADGASVPFE 462
T ++ P F +P E + S LKG + Y+ T TEA E +S+P
Sbjct: 965 TILEEDPPF-VPKPFSPEDTVYFDSRGLKGFDFSEYYNQPTVTEAQKLEEERPASSIPQH 1023
Query: 463 IN 468
++
Sbjct: 1024 VS 1025
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 9.2
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +1
Query: 352 PSNTLKGTPITRVYSDKTGTEAVTYGLEADGASVPFEINPQTGVVTVNDTLID-KENRSY 528
P N P + + SD T A+ + P +I P+ T+N + K+N +
Sbjct: 433 PLNAHMIAPFSDIVSDHTDFTAIVKSY-FESVDNPLDI-PKPLTNTINKFVNQSKDNLNP 490
Query: 529 SLWVTAMDGSIPQRTGVFAIITDN 600
LWV A + + + VF I+ ++
Sbjct: 491 DLWVEARNAMLMAQEHVFDIMQNS 514
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 541 TAMDGSI-PQRTGVFAIITDNSGVRPKIPQPP 633
+A+ S+ PQ V + + S RP+IPQPP
Sbjct: 1044 SALSPSVTPQLPPVSSRLPPVSATRPQIPQPP 1075
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 9.2
Identities = 14/61 (22%), Positives = 25/61 (40%)
Frame = +1
Query: 310 HLPAIMHVERNWFVPSNTLKGTPITRVYSDKTGTEAVTYGLEADGASVPFEINPQTGVVT 489
H+P I + R+ +P+N K I R + + +VP+E + VV
Sbjct: 374 HIPEIRRIARHRHLPTNVKKAAEIKREEINSLKRREENIRRHSKKGAVPYEKERERHVVG 433
Query: 490 V 492
+
Sbjct: 434 I 434
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 355 SNTLKGTPITRVYSDKTGTEAVT 423
S+T+ TP++ +YS +GT V+
Sbjct: 131 SSTVSSTPVSTIYSGTSGTTFVS 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,502
Number of Sequences: 5004
Number of extensions: 58936
Number of successful extensions: 176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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