Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5635
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0580 + 9615646-9616647 31 0.77
09_06_0002 + 20121846-20123308,20123420-20123426 30 1.3
04_03_0293 - 14001443-14001956,14002070-14002644 29 3.1
10_06_0130 - 11055305-11055593,11055666-11055949,11057271-110573... 28 5.4
03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679... 28 5.4
12_02_0503 - 19756561-19757991,19758606-19759967 28 7.2
06_01_0809 - 6100025-6100251,6100456-6100565,6100919-6100986,610... 28 7.2
03_02_0873 - 11991947-11992059,11992148-11992337,11992437-119926... 28 7.2
03_01_0632 - 4647271-4648704 28 7.2
11_04_0171 + 14471717-14472124 27 9.5
>03_02_0580 + 9615646-9616647
Length = 333
Score = 31.1 bits (67), Expect = 0.77
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Frame = +1
Query: 193 QAKDTDSGGQTITVI-----MSMGVWLTVAGCLVLTSSQQPPGFHLPAIMHVERNWFVPS 357
++K +D GG V+ S V L + + S PP LPA+ E+ WF P
Sbjct: 117 RSKPSDGGGTAAAVVDGREEESTNVHLHLLVEDEIRMSSSPPA--LPAVDQKEKTWFPPG 174
Query: 358 --NTLKGTPITRVYSDKTGTEAVTYGLEA 438
N P Y+D+ G E++ LE+
Sbjct: 175 GYNEQCKPPARITYADRCGPESLEAFLES 203
>09_06_0002 + 20121846-20123308,20123420-20123426
Length = 489
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 305 PGGCCDDVRTRHPATVSHTPIDMITVIV*PPESVSLACVASFVRAAT 165
P GCC+D T P + S+ P +M IV +S+ + ++R +T
Sbjct: 315 PPGCCNDDITTRPLSDSYPP-EMYRSIVCVGDSIKFVTIEGYLRDST 360
>04_03_0293 - 14001443-14001956,14002070-14002644
Length = 362
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 510 INQSVINSNDSCLRVDLERDRCAVSFQAVRDSLCAGLVAVHPGDGRTLQ 364
+N S+ N + CLRVD C +A DSL A L +H D L+
Sbjct: 100 LNMSMQNVRNCCLRVD-----CIGKIRAHYDSLVADLAGLHADDVANLR 143
>10_06_0130 -
11055305-11055593,11055666-11055949,11057271-11057398,
11058522-11058606,11058917-11060872
Length = 913
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 620 ILGRTPELSVIIANTPV-RCGMEPSIAVTHREYERFSL 510
+LGR PEL+V++ NT + C E +A YE L
Sbjct: 302 MLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGL 339
>03_02_0249 -
6792210-6792215,6794332-6794607,6794692-6795180,
6795832-6795900,6797316-6797403,6798193-6798224,
6799277-6799308,6799412-6799646
Length = 408
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = +3
Query: 231 CDHVYGSMAHGSGMSCS-----DIVTAASRLPPACDYA 329
C HV ++AH G CS D ++SR P CD A
Sbjct: 80 CQHVKKNIAHSPGQQCSPSERFDEWKSSSRRRPKCDVA 117
>12_02_0503 - 19756561-19757991,19758606-19759967
Length = 930
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 276 CSDIVTAASRLPPACD 323
C+++VT +SRLPPA D
Sbjct: 778 CANLVTTSSRLPPASD 793
>06_01_0809 -
6100025-6100251,6100456-6100565,6100919-6100986,
6101108-6101229,6101446-6101527,6101629-6101695,
6102811-6102883,6103032-6103148,6104167-6104259,
6104430-6104495,6105121-6105218,6105917-6106016,
6106486-6106660,6106828-6106894,6107574-6107712,
6107830-6107926,6107992-6108130,6108212-6108363
Length = 663
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 169 AALTNEA--TQAKDTDSGGQTITVIMSMGVWLTVAGCLVL 282
A L+N + T + S G T+T + G W+ AG LVL
Sbjct: 387 AKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVL 426
>03_02_0873 -
11991947-11992059,11992148-11992337,11992437-11992654,
11993409-11993503,11994201-11994406,11994658-11994750,
11994904-11994960,11995070-11995198,11996377-11996745
Length = 489
Score = 27.9 bits (59), Expect = 7.2
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 421 TYGLEADGASVPFEINPQTGVVTVNDTLIDKEN-RSYSLWVTAMDGSIPQRTGVFAIITD 597
T GL A G EI + V D L DK + RS WVT +DGS + G F +T
Sbjct: 168 TAGLRALGTEKSEEI-----LQAVRDLLQDKSSFRSQPEWVTVLDGS---QEGAFQWVTI 219
Query: 598 N 600
N
Sbjct: 220 N 220
>03_01_0632 - 4647271-4648704
Length = 477
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 516 EPLVLSMGDGNGRLHTTAHRSVRNNH 593
E LVL++ + NG LHTT R+ H
Sbjct: 179 EELVLALKEVNGELHTTRQLLARSQH 204
>11_04_0171 + 14471717-14472124
Length = 135
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2
Query: 374 RPSPGCTATRPAQRLSR 424
RPSPG AT AQRLSR
Sbjct: 79 RPSPGTLATIMAQRLSR 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,233,871
Number of Sequences: 37544
Number of extensions: 454527
Number of successful extensions: 1236
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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