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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5635
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    49   3e-06
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    35   0.043
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    35   0.043
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    35   0.043
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    31   0.92 
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    31   0.92 
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    31   0.92 
Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z69663-2|CAA93509.2|  819|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z29443-9|CAA82575.2|  292|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AB019521-1|BAC66463.1|  292|Caenorhabditis elegans T-box transcr...    29   2.8  
U50312-7|AAA92323.2|  306|Caenorhabditis elegans Collagen protei...    28   6.5  
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    27   8.6  

>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
 Frame = +1

Query: 277  VLTSSQQPPGFHLPAIMHVERNWFVPSNTLKGTPITRVY-SDKTGTEAVTYGLEADGASV 453
            VL      P F    I HVE    VP +   G P+ ++  SD        + L+  G  +
Sbjct: 2136 VLDEDDNAPRFS--RIFHVE----VPEDVRIGEPVIQLSASDADEHSNHRFELDGGGEGI 2189

Query: 454  PFEINPQTGVVTVNDTLIDKENRSYSLWVTAMDGSIPQRTGVFAIITDNSGVRPKIPQP 630
            PF ++  TG+V VND+L  ++ +SY + V   DG+    T +F  + D +   P   +P
Sbjct: 2190 PFRVDENTGMVFVNDSLDFEKKQSYRIKVKLTDGAWLIETSLFVNVKDVNDNAPIFEKP 2248



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = +1

Query: 349  VPSNTLKGTPITRVYS-DKTGTEAVTYGLEA-DGASVPFEINPQTGVVTVNDTLIDKENR 522
            +  N+  G+ I R+ + DK     + Y LE+ D  ++PF IN  TG +TV   +  +EN 
Sbjct: 1765 ISENSKIGSKIIRILATDKDKDAELQYSLESNDEITIPFRINVATGWITVAGKVNREENE 1824

Query: 523  SYSLWVTAMDGSIPQRTGVFAIITDNSGVRPKI 621
             +  +V   DG    +  V   + D +   P I
Sbjct: 1825 EFRFFVKVTDGEKSSKVIVEIHVEDFNDNHPMI 1857


>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical
           protein F15B9.7 protein.
          Length = 2577

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
 Frame = +1

Query: 178 TNEATQAKDTDSGGQTITVIMSM--GVWLTVAGCLVLTSSQQPPGFHLPAIMHVERNWFV 351
           T E T  +  D+    IT ++    G    ++  + LT +      H P ++  ++   +
Sbjct: 429 TGEVTLRERIDAKNSPITAVIRAKDGAQPALSSTVPLTINVIDINDHAPTLIAAQKMITL 488

Query: 352 PSNTLKGTPITRVYS---DKTGTEAVTYGLEADGASVPFEINPQTGVVTVNDTLIDKENR 522
             N   G  + RVY+   D      + Y +E    S  F I+  +G++     L+D+E  
Sbjct: 489 EENVAIGEEVGRVYAIDEDSGPNGIIKYSMEG---SEDFIIDEDSGLIKTTK-LLDRETT 544

Query: 523 S-YSLWVTAMDGSIP 564
           + YSL VTA D   P
Sbjct: 545 ARYSLKVTARDMGTP 559



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
 Frame = +1

Query: 349 VPSNTLKGTPITRVYS---DKTGTEAVTYGLEADGASVPFEINPQTGVVTVNDTLIDKEN 519
           +P ++  G P+  + +   D+     + Y +++   S  F I+P +G ++V+  L  ++ 
Sbjct: 691 IPEHSPIGYPVITLKAEDHDRGDNARIVYSIDS---SQFFRIDPSSGDISVSSDLDREDR 747

Query: 520 RSYSLWVTAMDGSIP 564
            ++S+ VTA D + P
Sbjct: 748 ATFSVIVTASDHASP 762


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
           protein F15B9.7 protein.
          Length = 2577

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
 Frame = +1

Query: 178 TNEATQAKDTDSGGQTITVIMSM--GVWLTVAGCLVLTSSQQPPGFHLPAIMHVERNWFV 351
           T E T  +  D+    IT ++    G    ++  + LT +      H P ++  ++   +
Sbjct: 429 TGEVTLRERIDAKNSPITAVIRAKDGAQPALSSTVPLTINVIDINDHAPTLIAAQKMITL 488

Query: 352 PSNTLKGTPITRVYS---DKTGTEAVTYGLEADGASVPFEINPQTGVVTVNDTLIDKENR 522
             N   G  + RVY+   D      + Y +E    S  F I+  +G++     L+D+E  
Sbjct: 489 EENVAIGEEVGRVYAIDEDSGPNGIIKYSMEG---SEDFIIDEDSGLIKTTK-LLDRETT 544

Query: 523 S-YSLWVTAMDGSIP 564
           + YSL VTA D   P
Sbjct: 545 ARYSLKVTARDMGTP 559



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
 Frame = +1

Query: 349 VPSNTLKGTPITRVYS---DKTGTEAVTYGLEADGASVPFEINPQTGVVTVNDTLIDKEN 519
           +P ++  G P+  + +   D+     + Y +++   S  F I+P +G ++V+  L  ++ 
Sbjct: 691 IPEHSPIGYPVITLKAEDHDRGDNARIVYSIDS---SQFFRIDPSSGDISVSSDLDREDR 747

Query: 520 RSYSLWVTAMDGSIP 564
            ++S+ VTA D + P
Sbjct: 748 ATFSVIVTASDHASP 762


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
           protein FMI-1 protein.
          Length = 2596

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
 Frame = +1

Query: 178 TNEATQAKDTDSGGQTITVIMSM--GVWLTVAGCLVLTSSQQPPGFHLPAIMHVERNWFV 351
           T E T  +  D+    IT ++    G    ++  + LT +      H P ++  ++   +
Sbjct: 429 TGEVTLRERIDAKNSPITAVIRAKDGAQPALSSTVPLTINVIDINDHAPTLIAAQKMITL 488

Query: 352 PSNTLKGTPITRVYS---DKTGTEAVTYGLEADGASVPFEINPQTGVVTVNDTLIDKENR 522
             N   G  + RVY+   D      + Y +E    S  F I+  +G++     L+D+E  
Sbjct: 489 EENVAIGEEVGRVYAIDEDSGPNGIIKYSMEG---SEDFIIDEDSGLIKTTK-LLDRETT 544

Query: 523 S-YSLWVTAMDGSIP 564
           + YSL VTA D   P
Sbjct: 545 ARYSLKVTARDMGTP 559



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
 Frame = +1

Query: 349 VPSNTLKGTPITRVYS---DKTGTEAVTYGLEADGASVPFEINPQTGVVTVNDTLIDKEN 519
           +P ++  G P+  + +   D+     + Y +++   S  F I+P +G ++V+  L  ++ 
Sbjct: 691 IPEHSPIGYPVITLKAEDHDRGDNARIVYSIDS---SQFFRIDPSSGDISVSSDLDREDR 747

Query: 520 RSYSLWVTAMDGSIP 564
            ++S+ VTA D + P
Sbjct: 748 ATFSVIVTASDHASP 762


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 19/79 (24%), Positives = 36/79 (45%)
 Frame = +1

Query: 379  ITRVYSDKTGTEAVTYGLEADGASVPFEINPQTGVVTVNDTLIDKENRSYSLWVTAMDGS 558
            ITR+ ++    + + + +  D   + F+I+   GVVTV   L  +    ++L V A DG 
Sbjct: 3013 ITRIVAEDADFDEIKFRMVDDFGGL-FQIDDINGVVTVVKPLDSEILGFFNLTVVASDGE 3071

Query: 559  IPQRTGVFAIITDNSGVRP 615
               +  +   + D +   P
Sbjct: 3072 FEDKATILVTVIDQNDNAP 3090



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +1

Query: 445 ASVPFEINPQTGVVTVNDTLIDKENRSYSLWVTAMDGSIP-QRTGVFAIITDNSGVR-PK 618
           + +P EIN  TG +T+ +  + K+  S+   V A+D  +P  R     ++   +G + P 
Sbjct: 533 SELPLEINANTGEITLVE--VPKKGNSWPATVWAIDLGLPLSRMSALNLMFYKNGTKIPA 590

Query: 619 IPQPPI 636
            P+P I
Sbjct: 591 KPKPII 596



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 397  DKTGTEAVTYGLEADGASVPFEINPQTGVVTVNDTL-IDKENRS-YSLWVTAMDGSIPQ 567
            D      + + +E       F I+  +G +T +    +D+E +S + LWV+  DG  PQ
Sbjct: 1092 DNDAAAPLMFKIERGDPQSFFRIDLTSGYITTSGIRRLDREKQSEHELWVSICDGGEPQ 1150



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +1

Query: 310  HLPAIMHVERNWFVPSNTLKGTPITRVYSDKTG-TEAVTYGLEADGASVPFEINPQTGVV 486
            H P    ++     P +T  G  +  + +  +   + + Y L     S   EI+P+TG V
Sbjct: 2197 HAPVFEKLKYTASTPESTSIGQRLLTIKATTSDENDTIEYSLSG---SKDIEIHPETGDV 2253

Query: 487  TVNDTLIDKENRSYSLWVTA 546
            T+   L  ++ + Y L + A
Sbjct: 2254 TITGQLDYEKTQKYDLKLVA 2273


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 19/79 (24%), Positives = 36/79 (45%)
 Frame = +1

Query: 379  ITRVYSDKTGTEAVTYGLEADGASVPFEINPQTGVVTVNDTLIDKENRSYSLWVTAMDGS 558
            ITR+ ++    + + + +  D   + F+I+   GVVTV   L  +    ++L V A DG 
Sbjct: 3013 ITRIVAEDADFDEIKFRMVDDFGGL-FQIDDINGVVTVVKPLDSEILGFFNLTVVASDGE 3071

Query: 559  IPQRTGVFAIITDNSGVRP 615
               +  +   + D +   P
Sbjct: 3072 FEDKATILVTVIDQNDNAP 3090



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +1

Query: 445 ASVPFEINPQTGVVTVNDTLIDKENRSYSLWVTAMDGSIP-QRTGVFAIITDNSGVR-PK 618
           + +P EIN  TG +T+ +  + K+  S+   V A+D  +P  R     ++   +G + P 
Sbjct: 533 SELPLEINANTGEITLVE--VPKKGNSWPATVWAIDLGLPLSRMSALNLMFYKNGTKIPA 590

Query: 619 IPQPPI 636
            P+P I
Sbjct: 591 KPKPII 596



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 397  DKTGTEAVTYGLEADGASVPFEINPQTGVVTVNDTL-IDKENRS-YSLWVTAMDGSIPQ 567
            D      + + +E       F I+  +G +T +    +D+E +S + LWV+  DG  PQ
Sbjct: 1092 DNDAAAPLMFKIERGDPQSFFRIDLTSGYITTSGIRRLDREKQSEHELWVSICDGGEPQ 1150



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +1

Query: 310  HLPAIMHVERNWFVPSNTLKGTPITRVYSDKTG-TEAVTYGLEADGASVPFEINPQTGVV 486
            H P    ++     P +T  G  +  + +  +   + + Y L     S   EI+P+TG V
Sbjct: 2197 HAPVFEKLKYTASTPESTSIGQRLLTIKATTSDENDTIEYSLSG---SKDIEIHPETGDV 2253

Query: 487  TVNDTLIDKENRSYSLWVTA 546
            T+   L  ++ + Y L + A
Sbjct: 2254 TITGQLDYEKTQKYDLKLVA 2273


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 19/79 (24%), Positives = 36/79 (45%)
 Frame = +1

Query: 379  ITRVYSDKTGTEAVTYGLEADGASVPFEINPQTGVVTVNDTLIDKENRSYSLWVTAMDGS 558
            ITR+ ++    + + + +  D   + F+I+   GVVTV   L  +    ++L V A DG 
Sbjct: 3013 ITRIVAEDADFDEIKFRMVDDFGGL-FQIDDINGVVTVVKPLDSEILGFFNLTVVASDGE 3071

Query: 559  IPQRTGVFAIITDNSGVRP 615
               +  +   + D +   P
Sbjct: 3072 FEDKATILVTVIDQNDNAP 3090



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +1

Query: 445 ASVPFEINPQTGVVTVNDTLIDKENRSYSLWVTAMDGSIP-QRTGVFAIITDNSGVR-PK 618
           + +P EIN  TG +T+ +  + K+  S+   V A+D  +P  R     ++   +G + P 
Sbjct: 533 SELPLEINANTGEITLVE--VPKKGNSWPATVWAIDLGLPLSRMSALNLMFYKNGTKIPA 590

Query: 619 IPQPPI 636
            P+P I
Sbjct: 591 KPKPII 596



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 397  DKTGTEAVTYGLEADGASVPFEINPQTGVVTVNDTL-IDKENRS-YSLWVTAMDGSIPQ 567
            D      + + +E       F I+  +G +T +    +D+E +S + LWV+  DG  PQ
Sbjct: 1092 DNDAAAPLMFKIERGDPQSFFRIDLTSGYITTSGIRRLDREKQSEHELWVSICDGGEPQ 1150



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +1

Query: 310  HLPAIMHVERNWFVPSNTLKGTPITRVYSDKTG-TEAVTYGLEADGASVPFEINPQTGVV 486
            H P    ++     P +T  G  +  + +  +   + + Y L     S   EI+P+TG V
Sbjct: 2197 HAPVFEKLKYTASTPESTSIGQRLLTIKATTSDENDTIEYSLSG---SKDIEIHPETGDV 2253

Query: 487  TVNDTLIDKENRSYSLWVTA 546
            T+   L  ++ + Y L + A
Sbjct: 2254 TITGQLDYEKTQKYDLKLVA 2273


>Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 421 TYGLEADGASVPFEINPQTGVVTVNDTLIDKENRSYSLWV 540
           +Y L A  + +  + NP+TG VTV  T I  E   ++L+V
Sbjct: 293 SYDLRAGASRIRVQKNPRTGKVTVKQTNIFNEAIYFALYV 332


>AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 421 TYGLEADGASVPFEINPQTGVVTVNDTLIDKENRSYSLWV 540
           +Y L A  + +  + NP+TG VTV  T I  E   ++L+V
Sbjct: 293 SYDLRAGASRIRVQKNPRTGKVTVKQTNIFNEAIYFALYV 332


>Z69663-2|CAA93509.2|  819|Caenorhabditis elegans Hypothetical
           protein K02B9.2 protein.
          Length = 819

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = -3

Query: 384 GDGRTLQSVGGHEPVPLHVHNRRQVEAWRLL*RCQNKTSR---YREPYSHRHDHSNRLTA 214
           GDGRT  +    EPV     NR + E+   +   Q++T     +R  Y+++ +  NR + 
Sbjct: 207 GDGRTSNNTSLQEPVIQDTRNRNRSESSSTM-SSQSRTEHAPIFRLQYNYQREADNRSSR 265

Query: 213 GVSVLG 196
            V + G
Sbjct: 266 LVQIQG 271


>Z29443-9|CAA82575.2|  292|Caenorhabditis elegans Hypothetical
           protein T07C4.6 protein.
          Length = 292

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = -1

Query: 464 ISNGTDAPSASRPYVTAS---VPVLSLYTRVMGVPFKVLEGTNQFLST 330
           ISN +++ +AS  Y+ +    +PVL++Y      PF V + +NQ ++T
Sbjct: 112 ISNYSESNNASMIYLNSMHKYIPVLTIYESPSESPFCVPQSSNQIVAT 159


>AB019521-1|BAC66463.1|  292|Caenorhabditis elegans T-box
           transcription factor TBX-9 protein.
          Length = 292

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = -1

Query: 464 ISNGTDAPSASRPYVTAS---VPVLSLYTRVMGVPFKVLEGTNQFLST 330
           ISN +++ +AS  Y+ +    +PVL++Y      PF V + +NQ ++T
Sbjct: 112 ISNYSESNNASMIYLNSMHKYIPVLTIYESPSESPFCVPQSSNQIVAT 159


>U50312-7|AAA92323.2|  306|Caenorhabditis elegans Collagen protein
           144 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
 Frame = +1

Query: 247 GVWLTVAGCLVLTSSQQPPGFHLPAIMHVERNWF-----VPSNTLKGTPITRVYSDKTGT 411
           G WLTV   L++T+S     F + A++    + +     V    L G  + RV +D   T
Sbjct: 7   GTWLTVMEKLLVTASATAATFAVFAVLFTVPSLYNTINEVHDQVLDGVSVFRVETDSAWT 66

Query: 412 EAVTYGLEADGASVPFEINP 471
           E +   +     + P  +NP
Sbjct: 67  EMMDIQITVTPPTKP-RVNP 85


>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
           protein W02C12.1 protein.
          Length = 1372

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = -1

Query: 332 TCIIAGRWKPGGCCDDVRTRHPATVSHTPIDMITVIV*PPESVSLACVASFVRAATR 162
           TC   G+WKP         R+P    H P   + VIV      S AC  S   A T+
Sbjct: 750 TCAADGKWKPNK-SPSTMFRYPQCTKHVPATKV-VIVRIIYGSSPACTESSKEAFTQ 804


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/67 (28%), Positives = 26/67 (38%)
 Frame = +1

Query: 316  PAIMHVERNWFVPSNTLKGTPITRVYSDKTGTEAVTYGLEADGASVPFEINPQTGVVTVN 495
            P +   ER   V S T   T +TR Y+D+   E    G  +   S   E      V T  
Sbjct: 2816 PVLSEKEREHQVTSETTTTTTVTREYNDEPEDEQEHQGPHSPAPSSHTEAEHPHIVETTT 2875

Query: 496  DTLIDKE 516
             T + +E
Sbjct: 2876 TTTVTRE 2882


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,748,605
Number of Sequences: 27780
Number of extensions: 366709
Number of successful extensions: 1131
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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