Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5634
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.38 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   2.0  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   3.5  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   3.5  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    26   4.7  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    25   8.2  

>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 365 PTRSKTSALGTNPIALAAPAKNGDNLVVDLATTAV 469
           PT S TS +  +P+  AAP+ N + ++  L +  V
Sbjct: 354 PTTSSTSVISPDPLQTAAPSANVNEVIASLESKVV 388


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +2

Query: 320 GLIGLSFTNSSPILVPTRSKTSALGTNPIALAAPAKNGDNLVVDLATTAVAMGKV 484
           GL+ +S    SPIL  T+    + G+N I+L     N  + VVD    A   G V
Sbjct: 11  GLLTISLAQCSPILKDTKDTKFSTGSN-ISLKKRDTNVFDSVVDTINPASYFGTV 64


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 35  ADTVGHYSHG-LNRLEFYINDILSKATDPCAKPVILKESAATALV 166
           A ++GH ++   N+L  +   I S +T P   P+I+ +S +++++
Sbjct: 256 ASSLGHRTNNNQNQLIRFSTQIRSSSTSPPRSPLIISDSPSSSII 300


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 243 PASCAFLIATSIQKFPTVAPKASQPSTRAVAADSFNITGFA 121
           P+  A  ++T I+  P     +  PST    AD+ NIT +A
Sbjct: 341 PSVPAHTVSTDIRSSPFSGRPSDNPSTLISTADADNITLYA 381


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
 Frame = +1

Query: 88  KRYPVKSNRSLC--KAGDIE 141
           KR P+ SNRSLC  K GD++
Sbjct: 448 KRVPLLSNRSLCYQKVGDLK 467


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -2

Query: 414 AKAMGFVPNALVLDLVGTNIGEEFVNDSP--MRPCFSAFNAQYPAI 283
           AKA+    +A  L +VG+ + ++++ D P  +R  F+A     P+I
Sbjct: 242 AKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSI 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,810
Number of Sequences: 5004
Number of extensions: 44154
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)