Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5633
(382 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 65 3e-12
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 26 2.3
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 3.0
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 25 5.3
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc... 25 5.3
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 25 5.3
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 24 7.0
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 24 7.0
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 24 9.3
SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1 famil... 24 9.3
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 65.3 bits (152), Expect = 3e-12
Identities = 25/79 (31%), Positives = 47/79 (59%)
Frame = -2
Query: 330 CPTCGTAYDNQEIEWRLIETMNKRPMAYTLQDLICSRCRQVKRENLSVVCDCAGDFSLMV 151
C +C YD E L++ + + Y LQDLICS+C+ VK+ +L C C+G++ L +
Sbjct: 2104 CSSCNLVYDRWVFEETLVDNLYHQLTLYQLQDLICSKCKTVKQWSLKERCSCSGEWVLQL 2163
Query: 150 PVTEIKDQLMTFKTITEYY 94
T+ ++ L ++++ ++Y
Sbjct: 2164 SPTKFREMLNVYQSVADFY 2182
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 2.3
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 125 NWSLISVTGTISEKSPAQSQTTDKFSRFTWRHRL 226
NW+ +S G + + Q FS F WRH L
Sbjct: 145 NWNRLSREGVLYGGMKSYRQMCRYFSGFFWRHPL 178
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 3.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 205 FYLATSATYKILQRIRHRTFVHRLD 279
F + T KILQR+RH+ V L+
Sbjct: 317 FPITTVREVKILQRLRHKNIVRLLE 341
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 5.3
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Frame = -2
Query: 363 ARDDTERPACLCPTCGT--AYD----NQEIEWRLIETMNKRPMAYTLQ 238
ARD+ RPAC+ + T AYD N+ I R IE N Y ++
Sbjct: 368 ARDEVARPACIPDSVKTRRAYDANDPNRRILARDIEAANGGAGVYNVE 415
>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 24.6 bits (51), Expect = 5.3
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 185 TTDKFSRFTWRHRLH 229
T DK SR WR LH
Sbjct: 157 TIDKISRLEWREELH 171
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 24.6 bits (51), Expect = 5.3
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = -2
Query: 321 CGTAYDNQEIEWRLIETMNKRPMAYTLQDLICSRCRQVKRENLSVVCDCAGD 166
CGT+Y + L E + P+ L RC V R++ + +G+
Sbjct: 390 CGTSYHSCVAVRPLFEELTNIPVVVELASDFVDRCPSVFRDDTFIFVSQSGE 441
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 24.2 bits (50), Expect = 7.0
Identities = 6/16 (37%), Positives = 9/16 (56%)
Frame = -2
Query: 330 CPTCGTAYDNQEIEWR 283
CP C Y + ++WR
Sbjct: 57 CPACRRLYTEENVQWR 72
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 24.2 bits (50), Expect = 7.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 300 DYHMLFHKLDINTPDVPCRLARPCT 374
D+ L HK PD P L P T
Sbjct: 68 DFSFLMHKSTDENPDTPSNLDSPST 92
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 23.8 bits (49), Expect = 9.3
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -2
Query: 237 DLICSRCRQVKRENLSVVCDCAGDFSLMVPVTEIKDQLMTFKTITEYY 94
D + R R+NL +V A +S +V I + FKT Y
Sbjct: 662 DYLREMLRSNLRQNLQIVVQIATRYSDLVGAQRIIEMFEKFKTFEGLY 709
>SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 153
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Frame = -2
Query: 249 YTLQDLICSRCRQVK----RENLSVVCDCAGD 166
YTL D IC +C +V R+N C D
Sbjct: 19 YTLLDTICPKCEKVPMMRLRDNPMFCVSCIND 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,330
Number of Sequences: 5004
Number of extensions: 30519
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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