Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5633
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 56 1e-08
08_02_0311 - 15635165-15635590,15635777-15638698 29 1.6
03_01_0506 + 3816676-3817971 28 2.9
02_05_0748 - 31463559-31464764 28 2.9
12_02_0333 + 17660454-17660502,17660587-17660704,17661181-176612... 27 3.8
08_02_0601 + 19177129-19177245,19178231-19179103 27 3.8
05_03_0092 - 8338095-8338230,8338316-8338668 27 6.6
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 27 6.6
12_01_0624 - 5137096-5137310,5137923-5138380,5138428-5140070,514... 26 8.7
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936 26 8.7
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 55.6 bits (128), Expect = 1e-08
Identities = 31/92 (33%), Positives = 43/92 (46%)
Frame = -2
Query: 381 LDLCRDARDDTERPACLCPTCGTAYDNQEIEWRLIETMNKRPMAYTLQDLICSRCRQVKR 202
LDLCRD+ + C P CG Y +++E L LQDL+C RCRQVK
Sbjct: 2093 LDLCRDSTLQGQEWRCAVPQCGQPYHREQMENAL------------LQDLVCLRCRQVKA 2140
Query: 201 ENLSVVCDCAGDFSLMVPVTEIKDQLMTFKTI 106
+LS C C G F ++ ++ F +
Sbjct: 2141 AHLSEQCSCGGAFRCKEESSQFLSKMRVFLNV 2172
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 28.7 bits (61), Expect = 1.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 375 LCRDARDDTERPACLCPTCGTAY 307
+CRD D ++ C+CP C Y
Sbjct: 164 ICRDCYLDAQKDGCICPGCKEHY 186
>03_01_0506 + 3816676-3817971
Length = 431
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 324 TCGTAYDNQEIEWRLIETMNK 262
TCG YD + WR+IE M++
Sbjct: 297 TCGEEYDLKRRSWRVIENMSE 317
>02_05_0748 - 31463559-31464764
Length = 401
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 324 TCGTAYDNQEIEWRLIETMNK 262
TCG YD ++ WR+IE M++
Sbjct: 267 TCGEEYDLEKGTWRVIENMSE 287
>12_02_0333 +
17660454-17660502,17660587-17660704,17661181-17661255,
17661341-17661412,17661606-17661643,17661758-17661791,
17662396-17662519,17663334-17663417,17663991-17664056,
17664110-17664316
Length = 288
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 309 YDNQEIEWRLIETMNKRPMAYTLQDLICSRC 217
YD +E+ +E + R YT +D+IC RC
Sbjct: 259 YDLEEVP--PLEELEARAAPYTCRDIICCRC 287
>08_02_0601 + 19177129-19177245,19178231-19179103
Length = 329
Score = 27.5 bits (58), Expect = 3.8
Identities = 19/77 (24%), Positives = 27/77 (35%)
Frame = -2
Query: 366 DARDDTERPACLCPTCGTAYDNQEIEWRLIETMNKRPMAYTLQDLICSRCRQVKRENLSV 187
DA D P + +C EI W + R + T+ D + R V
Sbjct: 198 DAAGDVGGPTVMSSSC-----TPEIAWTKEKAEKDRSRSMTMDDALRVSLRLVDDGGGGG 252
Query: 186 VCDCAGDFSLMVPVTEI 136
C CA D + P T +
Sbjct: 253 ACSCARDDTATAPTTTV 269
>05_03_0092 - 8338095-8338230,8338316-8338668
Length = 162
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 237 LAAYTPSDVCSSSRLVAILFPDYHMLFH--KLDINTPDVPCRL 359
+ A +P+D S+ V + F D H ++H K+++N V C +
Sbjct: 77 ITARSPADCFSAEGYVWLDFSDLHAIYHQDKMNVNYVGVWCMM 119
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 336 CLCPTCGTAYDNQEIEWRLIET-MNKRPMAY 247
C C CG +N+ I IET + + P+A+
Sbjct: 128 CHCSPCGNKIENENIRKEAIETILLRNPLAF 158
>12_01_0624 -
5137096-5137310,5137923-5138380,5138428-5140070,
5140245-5140462,5140589-5140757,5141249-5141305
Length = 919
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 318 GTAYDNQEIEWRLIETMNKRPMAYTLQDLICSRCRQVKRE 199
G Y N+ I L++TM +T+ D++ S CR V ++
Sbjct: 272 GKEYYNELIIRNLLQTMPGDNNNWTMHDVVRSFCRHVAKD 311
>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
Length = 838
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 367 GRARRHGTSGVFMSNLWNSI**SGNRMATNRDDEQTSDG 251
G+A G++ F+ NLWNS+ SG+ N + S+G
Sbjct: 771 GQATVKGSAS-FLLNLWNSLCPSGSATLENEKGKIVSEG 808
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,920,349
Number of Sequences: 37544
Number of extensions: 188175
Number of successful extensions: 501
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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