Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5633
         (382 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061620-1|AAL29168.1|  711|Drosophila melanogaster SD09005p pro...    91   4e-19
AE014297-3316|AAF56126.3| 2236|Drosophila melanogaster CG6768-PA...    91   4e-19
AB035512-1|BAB17608.1| 2220|Drosophila melanogaster DNA polymera...    83   2e-16
AE014134-1162|AAN10598.1| 2922|Drosophila melanogaster CG11321-P...    27   6.2  
AE014134-1161|AAF52435.2| 2594|Drosophila melanogaster CG11321-P...    27   6.2  

>AY061620-1|AAL29168.1|  711|Drosophila melanogaster SD09005p
           protein.
          Length = 711

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 41/94 (43%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
 Frame = -2

Query: 381 LDLCRDARDDTER--PACLCPTCGTAYDNQEIEWRLIETMNKRPMAYTLQDLICSRCRQV 208
           LDLC+D     +   P  LC  C  AYDN+EIE R+++ + ++ M+Y LQDL CSRC ++
Sbjct: 597 LDLCKDKHRAMKDGVPVWLCAQCYVAYDNEEIEMRMLDALQRKMMSYVLQDLRCSRCSEI 656

Query: 207 KRENLSVVCDCAGDFSLMVPVTEIKDQLMTFKTI 106
           KRENL+  C CAG+F  ++   +I+  L TF  +
Sbjct: 657 KRENLAEFCTCAGNFVPLISGKDIQTLLGTFNKV 690


>AE014297-3316|AAF56126.3| 2236|Drosophila melanogaster CG6768-PA
            protein.
          Length = 2236

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 41/94 (43%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
 Frame = -2

Query: 381  LDLCRDARDDTER--PACLCPTCGTAYDNQEIEWRLIETMNKRPMAYTLQDLICSRCRQV 208
            LDLC+D     +   P  LC  C  AYDN+EIE R+++ + ++ M+Y LQDL CSRC ++
Sbjct: 2122 LDLCKDKHRAMKDGVPVWLCAQCYVAYDNEEIEMRMLDALQRKMMSYVLQDLRCSRCSEI 2181

Query: 207  KRENLSVVCDCAGDFSLMVPVTEIKDQLMTFKTI 106
            KRENL+  C CAG+F  ++   +I+  L TF  +
Sbjct: 2182 KRENLAEFCTCAGNFVPLISGKDIQTLLGTFNKV 2215


>AB035512-1|BAB17608.1| 2220|Drosophila melanogaster DNA polymerase
            epsilon protein.
          Length = 2220

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 36/89 (40%), Positives = 56/89 (62%)
 Frame = -2

Query: 372  CRDARDDTERPACLCPTCGTAYDNQEIEWRLIETMNKRPMAYTLQDLICSRCRQVKRENL 193
            CRD     ++   +   C  AYDN+EIE R+++ + ++ M+Y LQDL CSRC ++KRENL
Sbjct: 2111 CRDLDLCKDKHRAMKDGCYVAYDNEEIEMRMLDALQRKMMSYVLQDLRCSRCSEIKRENL 2170

Query: 192  SVVCDCAGDFSLMVPVTEIKDQLMTFKTI 106
            +  C CAG+F  ++   +I+  L TF  +
Sbjct: 2171 AEFCTCAGNFVPLISGKDIQTLLGTFNKV 2199


>AE014134-1162|AAN10598.1| 2922|Drosophila melanogaster CG11321-PB,
            isoform B protein.
          Length = 2922

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 110  VLKVINWSLISVTGTISEKSPAQSQTTDKFSRFTWRH 220
            +++++  S IS   T+    PA+ ++TD    F W+H
Sbjct: 1313 IMRILTKSPIS---TMKPSGPAEDKSTDDVKNFVWQH 1346


>AE014134-1161|AAF52435.2| 2594|Drosophila melanogaster CG11321-PA,
            isoform A protein.
          Length = 2594

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 110  VLKVINWSLISVTGTISEKSPAQSQTTDKFSRFTWRH 220
            +++++  S IS   T+    PA+ ++TD    F W+H
Sbjct: 1251 IMRILTKSPIS---TMKPSGPAEDKSTDDVKNFVWQH 1284


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,084,815
Number of Sequences: 53049
Number of extensions: 337485
Number of successful extensions: 1034
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1024276155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)