Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5633
         (382 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr...    55   1e-08
U42848-7|AAA83612.2|  567|Caenorhabditis elegans Hypothetical pr...    31   0.37 
Z80216-9|CAH10778.1|  403|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z80216-8|CAB02284.2|  261|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AF067622-3|ABD63225.1|  447|Caenorhabditis elegans Hypothetical ...    27   4.5  
U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family p...    27   6.0  
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical...    26   7.9  

>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
            F33H2.5 protein.
          Length = 2144

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 20/76 (26%), Positives = 43/76 (56%)
 Frame = -2

Query: 330  CPTCGTAYDNQEIEWRLIETMNKRPMAYTLQDLICSRCRQVKRENLSVVCDCAGDFSLMV 151
            C TC +  ++  I+  + + +N+   AY +QD  C++C+ V+ + LS+ C+C   F   +
Sbjct: 2050 CATCQSKLNSDVIDMMICDRLNQLLTAYQIQDHQCTKCKSVRHDTLSMYCECCSQFIPQI 2109

Query: 150  PVTEIKDQLMTFKTIT 103
               ++K +  T +T++
Sbjct: 2110 TPAQLKHEASTVETVS 2125


>U42848-7|AAA83612.2|  567|Caenorhabditis elegans Hypothetical
           protein C31H1.8 protein.
          Length = 567

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 6/32 (18%)
 Frame = -2

Query: 204 RENLSVVCDCAGDFSLM------VPVTEIKDQ 127
           R++  +VC+C GDFSL+      VPVT+I D+
Sbjct: 338 RQHEGLVCECLGDFSLIRHRPTSVPVTKILDE 369


>Z80216-9|CAH10778.1|  403|Caenorhabditis elegans Hypothetical
           protein F10G8.9b protein.
          Length = 403

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 195 NSHVLPGDIGYI*DLAAYTPSDVCSSSRLVAILFPDYHM 311
           N+H+ P DIGY+   A  TP+     +  V  +FP+ ++
Sbjct: 278 NAHLEPKDIGYVNAHATSTPNGDSVEAEAVRQVFPEQNI 316


>Z80216-8|CAB02284.2|  261|Caenorhabditis elegans Hypothetical
           protein F10G8.9a protein.
          Length = 261

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 195 NSHVLPGDIGYI*DLAAYTPSDVCSSSRLVAILFPDYHM 311
           N+H+ P DIGY+   A  TP+     +  V  +FP+ ++
Sbjct: 136 NAHLEPKDIGYVNAHATSTPNGDSVEAEAVRQVFPEQNI 174


>Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical protein
            F13D2.1 protein.
          Length = 1342

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -2

Query: 252  AYTLQDLICSRCRQVKRENLSVVCDCAGDFSLMVPVTEIKDQLMTFKTITEY 97
            A T   + C++C Q   ENL  +    G F +   +  I + LM     T Y
Sbjct: 1202 AETTCSVKCNKCHQDSPENLQQLLSTNGIFGIRFELVSISNSLMNGANYTIY 1253


>Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical protein
            F13D2.1 protein.
          Length = 1342

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -2

Query: 252  AYTLQDLICSRCRQVKRENLSVVCDCAGDFSLMVPVTEIKDQLMTFKTITEY 97
            A T   + C++C Q   ENL  +    G F +   +  I + LM     T Y
Sbjct: 1202 AETTCSVKCNKCHQDSPENLQQLLSTNGIFGIRFELVSISNSLMNGANYTIY 1253


>AF067622-3|ABD63225.1|  447|Caenorhabditis elegans Hypothetical
           protein F33E11.6b protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -2

Query: 366 DARDDTERPACLCPTCGTAYDNQEIEWRLIETMNKRPMAYTLQDL-ICSRCRQVKRENLS 190
           D+ + T      C TC  AY  Q IE         +   ++  D  +CS C + ++E+  
Sbjct: 336 DSCEKTGGEMICCATCKIAYHPQCIEMPERMAALVKTYEWSCVDCRLCSICNKPEKEDEI 395

Query: 189 VVCD 178
           V CD
Sbjct: 396 VFCD 399


>U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family
           protein 35 protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 180 DCAGDFSLMVPVTEIKDQLMTFKTITEY 97
           DC G F    P  EIK  L+TF   T Y
Sbjct: 162 DCFGCFQAHGPPVEIKFALLTFIATTRY 189


>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
            protein Y71F9AL.17 protein.
          Length = 1232

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 345  RPACLCPTCGTAY 307
            RP C CP CG +Y
Sbjct: 1189 RPLCKCPYCGASY 1201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,925,826
Number of Sequences: 27780
Number of extensions: 177834
Number of successful extensions: 478
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)